Hi Gonzalo, The message you show below is just a warning, not an actual error. Do you get actual compilation errors? If so please share them.
Try running the tests with: ctest --output-on-failure and sharing the error messages you see. Best, -greg On Fri, Oct 8, 2021 at 1:49 PM Gonzalo Colmenarejo < colmenarejo.gonz...@gmail.com> wrote: > Hi, > I'm having issues trying to build RDKt from source with Conda using the > recipe in the RDKit web page. The build is apparently complete but the > ctest only achieves 35% of passed tests. I'm using an Ubuntu 20 > workstation. > > I first generate a Conda environment with all the required stuff: > > conda create --name rdksc python==3.8.1 cmake cairo pillow eigen > pkg-config boost boost-cpp py-boost gxx_linux-64 numpy > > After cloning the git repository then I run cmake (following the > instructions): > > cmake -DPy_ENABLE_SHARED=1 -DRDK_INSTALL_INTREE=ON > -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_CPP_TESTS=ON > -DPYTHON_NUMPY_INCLUDE_PATH="$(python -c 'import numpy ; > print(numpy.get_include())')" -DBOOST_ROOT="$CONDA_PREFIX" .. > > Finally I run make and make install, and the build is complete but with a > series of messages. The ctest gives only a 35% of test passed. > > The messages I get in compilation are like these: > > In file included from > /home/gonzalo/anaconda3/envs/rdksc/include/boost/bind.hpp:30, > from > /home/gonzalo/anaconda3/envs/rdksc/include/boost/python/exception_translator.hpp:10, > from > /home/gonzalo/anaconda3/envs/rdksc/include/boost/python.hpp:28, > from /home/gonzalo/rdkit/Code/RDBoost/python.h:3, > from > /home/gonzalo/rdkit/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12: > /home/gonzalo/anaconda3/envs/rdksc/include/boost/bind.hpp:36:1: note: > #pragma message: The practice of declaring the Bind placeholders (_1, _2, > ...) in the global namespace is deprecated. Please use > <boost/bind/bind.hpp> + using namespace boost::placeholders, or define > BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. > 36 | BOOST_PRAGMA_MESSAGE( > | ^~~~~~~~~~~~~~~~~~~~ > > I'd really acknowledge any help in getting this fixed and why is this > message showing up. > > Thanks a lot in advance > > Gonzalo > > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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