Hello Everyone, I'm having some trouble trying to depict molecules the exact same way as the input mol block (V2000) was drawn. My main problem is that I've drawn in a wedge bond between atoms 1 and 7 (the right hand side of the cyclopropyl ring), and RDKit depicts the molecule with a wedge bond between atoms 0 and 1 (the left hand side of the cyclohexane ring).
Google colab showing the difference between the structures <https://colab.research.google.com/drive/1MAeSpivr4IRfu0T34MmDoaICXSig1aja?usp=sharing> Is there a way to force the depiction to match the input exactly without having to set the bond types manually? Molecule in question: ACCLDraw03222210522D 11 12 0 0 1 0 0 0 0 0999 V2000 15.0356 -8.9726 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 16.0593 -8.3815 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 17.0831 -8.9726 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 17.0831 -10.1547 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 16.0593 -10.7457 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 15.0356 -10.1547 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 16.0593 -11.9269 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 16.6510 -7.3567 0.0000 C 0 0 3 0 0 0 0 0 0 0 0 0 15.4680 -7.3567 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 17.6738 -6.7662 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 18.6967 -7.3567 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 1 0 0 0 0 3 4 1 0 0 0 0 4 5 1 0 0 0 0 5 6 1 0 0 0 0 1 6 1 0 0 0 0 5 7 1 1 0 0 0 2 8 1 1 0 0 0 8 9 1 0 0 0 0 2 9 1 0 0 0 0 8 10 1 0 0 0 0 10 11 1 0 0 0 0 M END Best, Adam
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