Don't worry :-)
Let's refine the search?
You can set back some of the folders to see which ones are causing the problem.
(For example, ***I am assuming you didn't do anything with the backup folder***
to be sure that the problem is in { .config , .compiz }
rsync -a ~/backup/ ~/double-backup-to-keep-chromium-links-even-safer/
rm -rf ~/{.gnome*,.gconf*} ; rsync -a ~/backup/{.gnome*,.gconf*} ~/
Reboot. Should be working well.
rm -rf ~/{.config,.compiz} ; rsync -a ~/backup/{.config,.compiz} ~/
Reboot. Should be as bad as before. )
--
[regression-release] Neither compiz nor metacity nor nautilus are run at start
https://bugs.launchpad.net/bugs/467668
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