Author: bugman
Date: Sun Jan 11 12:20:07 2009
New Revision: 8371
URL: http://svn.gna.org/viewcvs/relax?rev=8371&view=rev
Log:
Created a system test for the writing and reading of a BRMB STAR formatted file.
Added:
branches/bmrb/test_suite/system_tests/bmrb.py
Modified:
branches/bmrb/test_suite/system_tests/__init__.py
Modified: branches/bmrb/test_suite/system_tests/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/__init__.py?rev=8371&r1=8370&r2=8371&view=diff
==============================================================================
--- branches/bmrb/test_suite/system_tests/__init__.py (original)
+++ branches/bmrb/test_suite/system_tests/__init__.py Sun Jan 11 12:20:07 2009
@@ -32,6 +32,7 @@
# relax system/functional test module imports.
from angles import Angles
+from bmrb import Bmrb
from consistency_tests import Ct
from dasha import Dasha
from diffusion_tensor import Diffusion_tensor
@@ -55,6 +56,7 @@
__all__ = ['angles',
+ 'brmb',
'consistency_tests',
'dasha'
'diffusion_tensor',
@@ -96,6 +98,7 @@
# Create an array of test suites (add your new TestCase classes here).
suite_array = []
suite_array.append(TestLoader().loadTestsFromTestCase(Angles))
+ suite_array.append(TestLoader().loadTestsFromTestCase(Bmrb))
suite_array.append(TestLoader().loadTestsFromTestCase(Ct))
suite_array.append(TestLoader().loadTestsFromTestCase(Dasha))
suite_array.append(TestLoader().loadTestsFromTestCase(Diffusion_tensor))
Added: branches/bmrb/test_suite/system_tests/bmrb.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/test_suite/system_tests/bmrb.py?rev=8371&view=auto
==============================================================================
--- branches/bmrb/test_suite/system_tests/bmrb.py (added)
+++ branches/bmrb/test_suite/system_tests/bmrb.py Sun Jan 11 12:20:07 2009
@@ -1,0 +1,74 @@
+###############################################################################
+# #
+# Copyright (C) 2008 Edward d'Auvergne #
+# #
+# This file is part of the program relax. #
+# #
+# relax is free software; you can redistribute it and/or modify #
+# it under the terms of the GNU General Public License as published by #
+# the Free Software Foundation; either version 2 of the License, or #
+# (at your option) any later version. #
+# #
+# relax is distributed in the hope that it will be useful, #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
+# GNU General Public License for more details. #
+# #
+# You should have received a copy of the GNU General Public License #
+# along with relax; if not, write to the Free Software #
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA #
+# #
+###############################################################################
+
+# Python module imports.
+from os import remove
+import sys
+from tempfile import mktemp
+from unittest import TestCase
+
+# relax module imports.
+from data import Relax_data_store; ds = Relax_data_store()
+
+
+class Bmrb(TestCase):
+ """TestCase class for functional tests of the reading and writing of BMRB
STAR formatted files."""
+
+ def setUp(self):
+ """Common set up for these system tests."""
+
+ # Create a temporary file name.
+ self.tmpfile = mktemp()
+
+
+ def tearDown(self):
+ """Reset the relax data storage object."""
+
+ # Reset the relax data storage object.
+ ds.__reset__()
+
+ # Delete the temporary file.
+ try:
+ remove(self.tmpfile)
+ except OSError:
+ pass
+
+
+ def test_rw_bmrb_model_free(self):
+ """Write and then read a BRMB STAR formatted file containing
model-free results."""
+
+ # Path of the files.
+ path = sys.path[-1] + '/test_suite/shared_data/model_free/OMP'
+
+ # Read the relax results file.
+ self.relax.interpreter._Pipe.create('results', 'mf')
+ self.relax.interpreter._Results.read(file='final_results_trunc_1.3',
dir=path)
+
+ # Write the BMRB STAR formatted file.
+ self.relax.interpreter._Bmrb.write(file=self.tmpfile, force=True)
+
+ # Create a new data pipe for reading the data back in.
+ self.relax.interpreter._Pipe.create('bmrb', 'mf')
+
+ # Read the BMRB STAR formatted file.
+ self.relax.interpreter._Bmrb.read(file=self.tmpfile)
+
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