Author: bugman
Date: Sun Jan 11 15:57:41 2009
New Revision: 8381
URL: http://svn.gna.org/viewcvs/relax?rev=8381&view=rev
Log:
Removed the BMRB STAR file compression abilities from the user functions.
The pystarlib does not support this.
Modified:
branches/bmrb/prompt/bmrb.py
Modified: branches/bmrb/prompt/bmrb.py
URL:
http://svn.gna.org/viewcvs/relax/branches/bmrb/prompt/bmrb.py?rev=8381&r1=8380&r2=8381&view=diff
==============================================================================
--- branches/bmrb/prompt/bmrb.py (original)
+++ branches/bmrb/prompt/bmrb.py Sun Jan 11 15:57:41 2009
@@ -70,11 +70,6 @@
~~~~~~~~~~~
To search for the results file in the current working directory, set
dir to None.
-
- This function is able to handle uncompressed, bzip2 compressed files,
or gzip compressed
- files automatically. The full file name including extension can be
supplied, however, if
- the file cannot be found, this function will search for the file name
with '.bz2' appended
- followed by the file name with '.gz' appended.
"""
# Function intro text.
@@ -96,7 +91,7 @@
bmrb.read(file=file, directory=dir)
- def write(self, file=None, dir='pipe_name', force=False, compress_type=0):
+ def write(self, file=None, dir='pipe_name', force=False):
"""Write the results to a BMRB NMR-STAR v3.1 formatted file.
Keyword Arguments
@@ -109,8 +104,6 @@
force: A flag which if True will cause the any pre-existing file to
be overwritten.
- compress_type: The type of compression to use when creating the file.
-
Description
~~~~~~~~~~~
@@ -118,16 +111,6 @@
To place the BMRB file in the current working directory, set dir to
None. If dir is set
to the special name 'pipe_name', then the results file will be placed
into a directory with
the same name as the current data pipe.
-
- The default behaviour of this function is to create an uncompressed
BMRB file. The file can
- however be saved in compressed format. This is controlled by the
compress_type argument
- which can be set to one of:
-
- 0: No compression (no file extension),
- 1: bzip2 compression ('.bz2' file extension),
- 2: gzip compression ('.gz' file extension).
-
- The complementary read function will automatically handle the
compressed files.
"""
# Function intro text.
@@ -135,8 +118,7 @@
text = sys.ps3 + "bmrb.write("
text = text + "file=" + `file`
text = text + ", dir=" + `dir`
- text = text + ", force=" + `force`
- text = text + ", compress_type=" + `compress_type` + ")"
+ text = text + ", force=" + `force` + ")"
print text
# File.
@@ -151,9 +133,5 @@
if type(force) != bool:
raise RelaxBoolError, ('force flag', force)
- # Compression type.
- if type(compress_type) != int:
- raise RelaxIntError, ('compression type', compress_type)
-
# Execute the functional code.
- bmrb.write(file=file, directory=dir, force=force,
compress_type=compress_type)
+ bmrb.write(file=file, directory=dir, force=force)
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