Author: bugman
Date: Thu Jan 15 10:27:18 2009
New Revision: 8456
URL: http://svn.gna.org/viewcvs/relax?rev=8456&view=rev
Log:
Added checks for the presence of the molecular data structures in the
Scientific python structure.
Modified:
branches/multi_structure/generic_fns/structure/scientific.py
Modified: branches/multi_structure/generic_fns/structure/scientific.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_structure/generic_fns/structure/scientific.py?rev=8456&r1=8455&r2=8456&view=diff
==============================================================================
--- branches/multi_structure/generic_fns/structure/scientific.py (original)
+++ branches/multi_structure/generic_fns/structure/scientific.py Thu Jan 15
10:27:18 2009
@@ -609,22 +609,25 @@
print model
# First add the peptide chains (generating the molecule names and
incrementing the molecule index).
- for mol in model.peptide_chains:
- mol_conts[-1].append(mol)
- self.target_mol_name(set=set_mol_name, target=new_mol_name,
index=mol_index, mol_num=mol_index+1, file=file)
- mol_index = mol_index + 1
+ if hasattr(model, 'peptide_chains'):
+ for mol in model.peptide_chains:
+ mol_conts[-1].append(mol)
+ self.target_mol_name(set=set_mol_name,
target=new_mol_name, index=mol_index, mol_num=mol_index+1, file=file)
+ mol_index = mol_index + 1
# Then the nucleotide chains (generating the molecule names and
incrementing the molecule index).
- for mol in model.nucleotide_chains:
- mol_conts[-1].append(mol)
- self.target_mol_name(set=set_mol_name, target=new_mol_name,
index=mol_index, mol_num=mol_index+1, file=file)
- mol_index = mol_index + 1
+ if hasattr(model, 'nucleotide_chains'):
+ for mol in model.nucleotide_chains:
+ mol_conts[-1].append(mol)
+ self.target_mol_name(set=set_mol_name,
target=new_mol_name, index=mol_index, mol_num=mol_index+1, file=file)
+ mol_index = mol_index + 1
# Finally all other molecules (generating the molecule names and
incrementing the molecule index).
- for key in model.molecules.keys():
- mol_conts[-1].append(model.molecules[key])
- self.target_mol_name(set=set_mol_name, target=new_mol_name,
index=mol_index, mol_num=mol_index+1, file=file)
- mol_index = mol_index + 1
+ if hasattr(model, 'molecules'):
+ for key in model.molecules.keys():
+ mol_conts[-1].append(model.molecules[key])
+ self.target_mol_name(set=set_mol_name,
target=new_mol_name, index=mol_index, mol_num=mol_index+1, file=file)
+ mol_index = mol_index + 1
# Increment the model counter.
model_num = model_num + 1
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