Author: bugman
Date: Mon Jan 19 11:04:57 2009
New Revision: 8504
URL: http://svn.gna.org/viewcvs/relax?rev=8504&view=rev
Log:
Deleted the Scientific python structural object add_struct() method.
Modified:
branches/multi_structure/generic_fns/structure/scientific.py
Modified: branches/multi_structure/generic_fns/structure/scientific.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_structure/generic_fns/structure/scientific.py?rev=8504&r1=8503&r2=8504&view=diff
==============================================================================
--- branches/multi_structure/generic_fns/structure/scientific.py (original)
+++ branches/multi_structure/generic_fns/structure/scientific.py Mon Jan 19
11:04:57 2009
@@ -58,64 +58,6 @@
# Execute the base class __init__() method.
Base_struct_API.__init__(self)
-
-
- def add_struct(self, name=None, model=None, file=None, path=None,
str=None, struct_index=None):
- """Add the given structure to the store.
-
- @keyword name: The structural identifier.
- @type name: str
- @keyword model: The structural model.
- @type model: int or None
- @keyword file: The name of the file containing the structure.
- @type file: str
- @keyword path: The optional path where the file is located.
- @type path: str
- @keyword str: The object containing the structural data.
- @type str: Structure_container instance
- @keyword struct_index: The index of the structural container, used
for replacing the
- structure.
- @type struct_index: int or None.
- """
-
- # Some checks.
- if struct_index != None:
- # Index check.
- if struct_index >= self.num:
- raise RelaxError, "The structure index of " + `struct_index` +
" cannot be more than the total number of structures of " + `self.num` + "."
-
- # ID check.
- if name != self.name[struct_index]:
- raise RelaxError, "The ID names " + `name` + " and " +
`self.name[struct_index]` + " do not match."
-
- # Model.
- if model != self.model[struct_index]:
- raise RelaxError, "The models " + `model` + " and " +
`self.model[struct_index]` + " do not match."
-
- # File name.
- if file != self.file[struct_index]:
- raise RelaxError, "The file names of " + `file` + " and " +
`self.file[struct_index]` + " do not match."
-
- # Initialise.
- else:
- self.num = self.num + 1
- self.name.append(name)
- self.model.append(model)
- self.file.append(file)
- self.path.append(path)
-
- # Initialise the structural object if not provided.
- if str == None:
- raise RelaxError, "The Scientific python structural object cannot
be set to None."
-
- # Add the structural data.
- if struct_index != None:
- if struct_index >= len(self.structural_data):
- self.structural_data.append(str)
- else:
- self.structural_data[struct_index] = str
- else:
- self.structural_data.append(str)
def __find_bonded_atom(self, attached_atom, mol_type, res):
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