Author: bugman
Date: Wed Jan 21 18:20:03 2009
New Revision: 8562
URL: http://svn.gna.org/viewcvs/relax?rev=8562&view=rev
Log:
Fix for calls to structure.read_pdb() in the setUp() method.
Modified:
branches/multi_structure/test_suite/system_tests/diffusion_tensor.py
Modified: branches/multi_structure/test_suite/system_tests/diffusion_tensor.py
URL:
http://svn.gna.org/viewcvs/relax/branches/multi_structure/test_suite/system_tests/diffusion_tensor.py?rev=8562&r1=8561&r2=8562&view=diff
==============================================================================
--- branches/multi_structure/test_suite/system_tests/diffusion_tensor.py
(original)
+++ branches/multi_structure/test_suite/system_tests/diffusion_tensor.py Wed
Jan 21 18:20:03 2009
@@ -43,21 +43,21 @@
# Sphere tensor initialization.
self.relax.interpreter._Pipe.switch('sphere')
- self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+ self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
self.relax.interpreter._Sequence.read(file='Ap4Aase.seq',
dir=sys.path[-1] + '/test_suite/shared_data/')
self.relax.interpreter._Diffusion_tensor.init(10e-9, fixed=True)
self.tmpfile_sphere = mktemp()
# Spheroid tensor initialization.
self.relax.interpreter._Pipe.switch('spheroid')
- self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+ self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
self.relax.interpreter._Sequence.read(file='Ap4Aase.seq',
dir=sys.path[-1] + '/test_suite/shared_data/')
self.relax.interpreter._Diffusion_tensor.init((2e-8, 1.3, 60-360,
290), param_types=2, spheroid_type='prolate', fixed=True)
self.tmpfile_spheroid = mktemp()
# Ellipsoid tensor initialization.
self.relax.interpreter._Pipe.switch('ellipsoid')
- self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=sys.path[-1] + '/test_suite/shared_data/structures', model=1)
+ self.relax.interpreter._Structure.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=sys.path[-1] + '/test_suite/shared_data/structures', read_model=1)
self.relax.interpreter._Sequence.read(file='Ap4Aase.seq',
dir=sys.path[-1] + '/test_suite/shared_data/')
self.relax.interpreter._Diffusion_tensor.init((9e-8, 5e6, 0.3, 60+360,
290, 100), fixed=False)
self.tmpfile_ellipsoid = mktemp()
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