Author: bugman
Date: Mon May 7 10:12:26 2012
New Revision: 16028
URL: http://svn.gna.org/viewcvs/relax?rev=16028&view=rev
Log:
The Bmrb.test_bmrb_rw GUI test is now complete and fully uses the new
auto-generated user functions.
This test will only pass once all the relevant user functions are converted to
the auto-generation
design!
Modified:
branches/uf_redesign/test_suite/gui_tests/bmrb.py
Modified: branches/uf_redesign/test_suite/gui_tests/bmrb.py
URL:
http://svn.gna.org/viewcvs/relax/branches/uf_redesign/test_suite/gui_tests/bmrb.py?rev=16028&r1=16027&r2=16028&view=diff
==============================================================================
--- branches/uf_redesign/test_suite/gui_tests/bmrb.py (original)
+++ branches/uf_redesign/test_suite/gui_tests/bmrb.py Mon May 7 10:12:26 2012
@@ -54,93 +54,48 @@
self.execute_uf(name='pipe.create', pipe_name='results',
pipe_type='mf')
# Read the results.
- results_read = uf_pages.results.Read_page(self._wizard)
- results_read.file.SetValue(str_to_gui(status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP'+sep+'final_results_trunc_1.3'))
- results_read.on_execute()
+ self.execute_uf(name='results.read', file='final_results_trunc_1.3',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
# Play with the data.
- deselect_all = uf_pages.deselect.All_page(self._wizard)
- deselect_all.on_execute()
-
- spin_copy = uf_pages.spin.Copy_page(self._wizard)
- spin_copy.res_from.SetValue(str_to_gui('9 None'))
- spin_copy.res_num_to.SetValue(str_to_gui('9'))
- spin_copy.spin_name_to.SetValue(str_to_gui('NE'))
- spin_copy.on_execute()
-
- select_spin = uf_pages.select.Spin_page(self._wizard)
- select_spin.spin_id.SetValue(str_to_gui(':9'))
- select_spin.on_execute()
- select_spin.spin_id.SetValue(str_to_gui(':10'))
- select_spin.on_execute()
- select_spin.spin_id.SetValue(str_to_gui(':11'))
- select_spin.on_execute()
-
- spin_name = uf_pages.spin.Name_page(self._wizard)
- spin_name.name.SetValue(str_to_gui('N'))
- spin_name.on_execute()
-
- spin_element = uf_pages.spin.Element_page(self._wizard)
- spin_element.spin_id.SetValue(str_to_gui('N'))
- spin_element.on_execute()
-
- #molecule_name = uf_pages.molecule.Name_page(self._wizard)
- #molecule_name.name.SetValue(str_to_gui('OMP'))
- #molecule_name.type.SetValue(str_to_gui('protein'))
- #molecule_name.on_execute()
-
- #bmrb_thiol_state = uf_pages.bmrb.Thiol_state_page(self._wizard)
- #bmrb_thiol_state.state.SetValue(str_to_gui('reduced'))
- #bmrb_thiol_state.on_execute()
+ self.execute_uf(name='deselect.all')
+ self.execute_uf(name='spin.copy', spin_from=':9', spin_to=':9@NE')
+ self.execute_uf(name='select.spin', ':9')
+ self.execute_uf(name='select.spin', ':10')
+ self.execute_uf(name='select.spin', ':11')
+ self.execute_uf(name='spin.name', name='N')
+ self.execute_uf(name='spin.element', element='N')
+ self.execute_uf(name='molecule.name', name='OMP')
+ self.execute_uf(name='molecule.type', type='protein')
+ self.execute_uf(name='bmrb.thiol_state', state='reduced')
# Display the data (as a test).
- #relax_data_display = uf_pages.relax_data.Display_page(self._wizard)
- #relax_data_display.ri_id.SetValue(str_to_gui('R1_800'))
- #relax_data_display.on_execute()
+ self.execute_uf(name='relax_data.display', ri_id='R1_800')
# Temperature control and peak intensity type.
ri_ids = ['R1_600', 'R2_600', 'NOE_600', 'R1_800', 'R2_800', 'NOE_800']
for i in range(6):
- pass
- #relax_data_temp_calibration =
uf_pages.relax_data.Temp_calibration_page(self._wizard)
- #relax_data_temp_calibration.ri_id.SetValue(str_to_gui(ri_ids[i]))
-
#relax_data_temp_calibration.method.SetValue(str_to_gui('methanol'))
- #relax_data_temp_calibration.on_execute()
-
- #relax_data_temp_control =
uf_pages.relax_data.Temp_control_page(self._wizard)
- #relax_data_temp_control.ri_id.SetValue(str_to_gui(ri_ids[i]))
- #relax_data_temp_control.method.SetValue(str_to_gui('single fid
interleaving'))
- #relax_data_temp_control.on_execute()
-
- #relax_data_peak_intensity_type =
uf_pages.relax_data.Peak_intensity_type_page(self._wizard)
-
#relax_data_peak_intensity_type.ri_id.SetValue(str_to_gui(ri_ids[i]))
- #relax_data_peak_intensity_type.type.SetValue(str_to_gui('height'))
- #relax_data_peak_intensity_type.on_execute()
+ self.execute_uf(name='relax_data.temp_calibration',
ri_id=ri_ids[i], method='methanol')
+ self.execute_uf(name='relax_data.temp_control', ri_id=ri_ids[i],
method='single fid interleaving')
+ self.execute_uf(name='relax_data.peak_intensity_type',
ri_id=ri_ids[i], type='height')
# Set up some BMRB information.
- #bmrb_software_select =
uf_pages.bmrb.Software_select_page(self._wizard)
- #bmrb_software_select.name.SetValue(str_to_gui('NMRPipe'))
- #bmrb_software_select.on_execute()
- #bmrb_software_select.name.SetValue(str_to_gui('Sparky'))
- #bmrb_software_select.version.SetValue(str_to_gui('3.106'))
- #bmrb_software_select.on_execute()
+ self.execute_uf(name='bmrb.software_select', 'NMRPipe')
+ self.execute_uf(name='bmrb.software_select', 'Sparky', version='3.106')
- self.execute_uf(page=uf_pages.bmrb.Citation_page, cite_id='test',
authors=[["Edward", "d'Auvergne", "E.", "J."], ["Paul", "Gooley", "P.", "R."]],
doi="10.1039/b702202f", pubmed_id="17579774", full_citation="d'Auvergne E. J.,
Gooley P. R. (2007). Set theory formulation of the model-free problem and the
diffusion seeded model-free paradigm. Mol. Biosyst., 3(7), 483-494.",
title="Set theory formulation of the model-free problem and the diffusion
seeded model-free paradigm.", status="published", type="journal",
journal_abbrev="Mol. Biosyst.", journal_full="Molecular Biosystems", volume=3,
issue=7, page_first=483, page_last=498, year=2007)
-
- #bmrb.software(name='X', url='http://www.nmr-relax.com',
vendor_name='me', cite_ids=['test'], tasks=['procrastinating', 'nothing much',
'wasting time'])
-
- #bmrb.script(file='noe.py',
dir=status.install_path+sep+'sample_scripts', analysis_type='noe',
engine='relax')
- #bmrb.script(file='relax_fit.py',
dir=status.install_path+sep+'sample_scripts', analysis_type='relax_fit',
engine='relax')
- #bmrb.script(file='dauvergne_protocol.py',
dir=status.install_path+sep+'sample_scripts'+sep+'model_free',
analysis_type='mf', model_selection='AIC', engine='relax', model_elim=True,
universal_solution=True)
+ self.execute_uf(name='bmrb.citation', cite_id='test',
authors=[["Edward", "d'Auvergne", "E.", "J."], ["Paul", "Gooley", "P.", "R."]],
doi="10.1039/b702202f", pubmed_id="17579774", full_citation="d'Auvergne E. J.,
Gooley P. R. (2007). Set theory formulation of the model-free problem and the
diffusion seeded model-free paradigm. Mol. Biosyst., 3(7), 483-494.",
title="Set theory formulation of the model-free problem and the diffusion
seeded model-free paradigm.", status="published", type="journal",
journal_abbrev="Mol. Biosyst.", journal_full="Molecular Biosystems", volume=3,
issue=7, page_first=483, page_last=498, year=2007)
+ self.execute_uf(name='bmrb.software', name='X',
url='http://www.nmr-relax.com', vendor_name='me', cite_ids=['test'],
tasks=['procrastinating', 'nothing much', 'wasting time'])
+ self.execute_uf(name='bmrb.script', file='noe.py',
dir=status.install_path+sep+'sample_scripts', analysis_type='noe',
engine='relax')
+ self.execute_uf(name='bmrb.script', file='relax_fit.py',
dir=status.install_path+sep+'sample_scripts', analysis_type='relax_fit',
engine='relax')
+ self.execute_uf(name='bmrb.script', file='dauvergne_protocol.py',
dir=status.install_path+sep+'sample_scripts'+sep+'model_free',
analysis_type='mf', model_selection='AIC', engine='relax', model_elim=True,
universal_solution=True)
# Write, then read the data to a new data pipe.
- #bmrb.write(file=ds.tmpfile, dir=None, version=ds.version, force=True)
- #pipe.create(pipe_name='new', pipe_type='mf')
- #bmrb.read(file=ds.tmpfile, version=ds.version)
+ self.execute_uf(name='bmrb.write', file=ds.tmpfile, dir=None,
version=ds.version, force=True)
+ self.execute_uf(name='pipe.create', pipe_name='new', pipe_type='mf')
+ self.execute_uf(name='bmrb.read', file=ds.tmpfile, version=ds.version)
# Display tests.
- #sequence.display()
- #relax_data.display(ri_id='R1_800')
+ self.execute_uf(name='sequence.display')
+ self.execute_uf(name='relax_data.display', ri_id='R1_800')
# Save the program state.
- #state.save('devnull', force=True)
+ self.execute_uf(name='state.save', 'devnull', force=True)
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