Author: bugman
Date: Thu Aug 21 11:05:12 2014
New Revision: 25156
URL: http://svn.gna.org/viewcvs/relax?rev=25156&view=rev
Log:
Removed all of the MODEL_*_FIT_R1 from the remaining unit tests.
These are for the tests of the specific_analyses.relax_disp.model module.
Modified:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
Modified:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py?rev=25156&r1=25155&r2=25156&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
(original)
+++ trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
Thu Aug 21 11:05:12 2014
@@ -21,8 +21,8 @@
# relax module imports.
from specific_analyses.relax_disp.model import nesting_model, nesting_param,
sort_models
-from specific_analyses.relax_disp.variables import MODEL_B14, MODEL_B14_FULL,
MODEL_CR72, MODEL_CR72_FULL, MODEL_DPL94_FIT_R1, MODEL_IT99, MODEL_MMQ_CR72,
MODEL_LM63, MODEL_LM63_3SITE, MODEL_MP05_FIT_R1, MODEL_NOREX,
MODEL_NOREX_R1RHO_FIT_R1, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL,
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_CPMG_2SITE_STAR,
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE,
MODEL_NS_MMQ_3SITE_LINEAR, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_2SITE_FIT_R1,
MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_R2EFF,
MODEL_TAP03_FIT_R1, MODEL_TP02_FIT_R1, MODEL_TSMFK01
-from specific_analyses.relax_disp.variables import MODEL_PARAMS_B14_FULL,
MODEL_PARAMS_CR72, MODEL_PARAMS_CR72_FULL, MODEL_PARAMS_LM63,
MODEL_PARAMS_LM63_3SITE, MODEL_PARAMS_MMQ_CR72, MODEL_PARAMS_MP05_FIT_R1,
MODEL_PARAMS_NS_MMQ_2SITE, MODEL_PARAMS_NS_MMQ_3SITE,
MODEL_PARAMS_NS_MMQ_3SITE_LINEAR, MODEL_PARAMS_NS_R1RHO_2SITE,
MODEL_PARAMS_NS_R1RHO_3SITE, MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR,
MODEL_PARAMS_TAP03_FIT_R1
+from specific_analyses.relax_disp.variables import MODEL_B14, MODEL_B14_FULL,
MODEL_CR72, MODEL_CR72_FULL, MODEL_DPL94, MODEL_IT99, MODEL_MMQ_CR72,
MODEL_LM63, MODEL_LM63_3SITE, MODEL_MP05, MODEL_NOREX, MODEL_NOREX_R1RHO,
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL,
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_CPMG_2SITE_STAR,
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE,
MODEL_NS_MMQ_3SITE_LINEAR, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE,
MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_R2EFF, MODEL_TAP03, MODEL_TP02, MODEL_TSMFK01
+from specific_analyses.relax_disp.variables import MODEL_PARAMS_B14_FULL,
MODEL_PARAMS_CR72, MODEL_PARAMS_CR72_FULL, MODEL_PARAMS_LM63,
MODEL_PARAMS_LM63_3SITE, MODEL_PARAMS_MMQ_CR72, MODEL_PARAMS_MP05,
MODEL_PARAMS_NS_MMQ_2SITE, MODEL_PARAMS_NS_MMQ_3SITE,
MODEL_PARAMS_NS_MMQ_3SITE_LINEAR, MODEL_PARAMS_NS_R1RHO_2SITE,
MODEL_PARAMS_NS_R1RHO_3SITE, MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR,
MODEL_PARAMS_TAP03
from test_suite.unit_tests.base_classes import UnitTestCase
@@ -337,13 +337,13 @@
def test_nesting_model_r1rho_1(self):
"""Unit test of function nesting_model, which determine which model to
nest from, testing for R1rho experiments."""
- ## Test MODEL_MP05_FIT_R1 model request, when models are all R1rho
models with fitted R1.
- # Define all the models tested in the analysis.
- self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1,
MODEL_DPL94_FIT_R1, MODEL_TP02_FIT_R1, MODEL_TAP03_FIT_R1, MODEL_MP05_FIT_R1,
MODEL_NS_R1RHO_2SITE_FIT_R1]
-
- # Define which current model is selected
- model = MODEL_MP05_FIT_R1
- model_nest = MODEL_TAP03_FIT_R1
+ ## Test MODEL_MP05 model request, when models are all R1rho models
with fitted R1.
+ # Define all the models tested in the analysis.
+ self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_DPL94,
MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE]
+
+ # Define which current model is selected
+ model = MODEL_MP05
+ model_nest = MODEL_TAP03
print("self.models is:", self_models)
print("Current model to analyse is:", model)
@@ -356,12 +356,12 @@
def test_nesting_model_r1rho_2(self):
"""Unit test of function nesting_model, which determine which model to
nest from, testing for R1rho experiments."""
- ## Test MODEL_TP02_FIT_R1 model request, when models are all R1rho
models with fitted R1, and MODEL_NS_R1RHO_2SITE_FIT_R1 was fitted first.
- # Define all the models tested in the analysis.
- self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_R2EFF,
MODEL_NOREX_R1RHO_FIT_R1, MODEL_NS_R1RHO_2SITE_FIT_R1, MODEL_TP02_FIT_R1]
-
- # Define which current model is selected
- model = MODEL_TP02_FIT_R1
+ ## Test MODEL_TP02 model request, when models are all R1rho models
with fitted R1, and MODEL_NS_R1RHO_2SITE was fitted first.
+ # Define all the models tested in the analysis.
+ self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_R2EFF,
MODEL_NOREX_R1RHO, MODEL_NS_R1RHO_2SITE, MODEL_TP02]
+
+ # Define which current model is selected
+ model = MODEL_TP02
model_nest = None
print("self.models is:", self_models)
@@ -375,12 +375,12 @@
def test_nesting_model_r1rho_3(self):
"""Unit test of function nesting_model, which determine which model to
nest from, testing for R1rho experiments."""
- ## Test MODEL_DPL94_FIT_R1 model request, when models are all R1rho
models with fitted R1, and MODEL_NS_R1RHO_2SITE_FIT_R1 was fitted first.
- # Define all the models tested in the analysis.
- self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1,
MODEL_NS_R1RHO_2SITE_FIT_R1, MODEL_DPL94_FIT_R1]
-
- # Define which current model is selected
- model = MODEL_DPL94_FIT_R1
+ ## Test MODEL_DPL94 model request, when models are all R1rho models
with fitted R1, and MODEL_NS_R1RHO_2SITE was fitted first.
+ # Define all the models tested in the analysis.
+ self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_NS_R1RHO_2SITE,
MODEL_DPL94]
+
+ # Define which current model is selected
+ model = MODEL_DPL94
model_nest = None
print("self.models is:", self_models)
@@ -394,12 +394,12 @@
def test_nesting_model_r1rho_4(self):
"""Unit test of function nesting_model, which determine which model to
nest from, testing for R1rho experiments."""
- ## Test MODEL_TP02_FIT_R1 model request, when model are all R1rho
models with fitted R1, and MODEL_DPL94_FIT_R1 was fitted first.
- # Define all the models tested in the analysis.
- self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1,
MODEL_DPL94_FIT_R1, MODEL_TP02_FIT_R1]
-
- # Define which current model is selected
- model = MODEL_TP02_FIT_R1
+ ## Test MODEL_TP02 model request, when model are all R1rho models with
fitted R1, and MODEL_DPL94 was fitted first.
+ # Define all the models tested in the analysis.
+ self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_DPL94, MODEL_TP02]
+
+ # Define which current model is selected
+ model = MODEL_TP02
model_nest = None
print("self.models is:", self_models)
@@ -509,8 +509,8 @@
"""Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
# Define parameters
- model_params = MODEL_PARAMS_TAP03_FIT_R1
- nested_model_params = MODEL_PARAMS_MP05_FIT_R1
+ model_params = MODEL_PARAMS_TAP03
+ nested_model_params = MODEL_PARAMS_MP05
# Get the dictionary of parameter conversion.
par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
@@ -670,8 +670,8 @@
## Test sort of models, when models are all R1rho models with fitted
R1.
# Define all the models tested in the analysis.
- self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1,
MODEL_DPL94_FIT_R1, MODEL_TP02_FIT_R1, MODEL_TAP03_FIT_R1, MODEL_MP05_FIT_R1,
MODEL_NS_R1RHO_2SITE_FIT_R1]
- expected_result = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1,
MODEL_MP05_FIT_R1, MODEL_TAP03_FIT_R1, MODEL_TP02_FIT_R1, MODEL_DPL94_FIT_R1,
MODEL_NS_R1RHO_2SITE_FIT_R1]
+ self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_DPL94,
MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE]
+ expected_result = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_MP05,
MODEL_TAP03, MODEL_TP02, MODEL_DPL94, MODEL_NS_R1RHO_2SITE]
# Test the return.
self.assertEqual(sort_models(models=self_models), expected_result)
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