Author: tlinnet
Date: Wed Sep 3 22:50:39 2014
New Revision: 25606
URL: http://svn.gna.org/viewcvs/relax?rev=25606&view=rev
Log:
Added systemtest to check the extraction of 'Noise Std Dev' from showApod in
NMRPipe suite.
Modified:
trunk/test_suite/system_tests/relax_disp.py
Modified: trunk/test_suite/system_tests/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_disp.py?rev=25606&r1=25605&r2=25606&view=diff
==============================================================================
--- trunk/test_suite/system_tests/relax_disp.py (original)
+++ trunk/test_suite/system_tests/relax_disp.py Wed Sep 3 22:50:39 2014
@@ -36,7 +36,7 @@
import dep_check
from lib.errors import RelaxError
from lib.io import get_file_path
-from lib.spectrum.nmrpipe import show_apod_extract
+from lib.spectrum.nmrpipe import show_apod_extract, show_apod_rmsd
from pipe_control.mol_res_spin import generate_spin_string, return_spin,
spin_loop
from pipe_control.minimise import assemble_scaling_matrix
from specific_analyses.relax_disp.checks import check_missing_r1
@@ -111,7 +111,8 @@
if not dep_check.showApod_module:
# The list of tests to skip.
to_skip = [
- "test_show_apod_extract"
+ "test_show_apod_extract",
+ "test_show_apod_rmsd"
]
# Store in the status object.
@@ -6737,6 +6738,22 @@
self.assertEqual(line, line_ver)
+ def test_show_apod_rmsd(self):
+ """Test getting the spectrum noise for spectrum fourier transformed
with NMRPipe, and tool showApod."""
+
+ # The path to the data files.
+ data_path = status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'repeated_analysis'+sep+'SOD1'+sep+'cpmg_disp_sod1d90a_060518'+sep+'cpmg_disp_sod1d90a_060518_normal.fid'+sep+'ft2_data'
+
+ # Define file name.
+ file_name = '128_0_FT.ft2'
+
+ # Call function.
+ rmsd = show_apod_rmsd(file_name=file_name, dir=data_path)
+
+ # Assert.
+ self.assertEqual(rmsd, 8583.41)
+
+
def test_sod1wt_t25_bug_21954_order_error_analysis(self):
"""Error analysis of SOD1-WT CPMG. From paper at
U{http://dx.doi.org/10.1073/pnas.0907387106}.
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