Author: bugman Date: Thu Sep 18 15:39:25 2014 New Revision: 25899 URL: http://svn.gna.org/viewcvs/relax?rev=25899&view=rev Log: Merged revisions 25846-25861,25897-25898 via svnmerge from svn+ssh://[email protected]/svn/relax/trunk
........ r25846 | bugman | 2014-09-15 16:27:17 +0200 (Mon, 15 Sep 2014) | 5 lines Added the Relax_disp.test_show_apod_rmsd_dir_to_files system test to the blacklist. This is if the showApod program is not installed on the machine and allows the test suite to pass. ........ r25847 | bugman | 2014-09-15 16:49:17 +0200 (Mon, 15 Sep 2014) | 6 lines Extended the printout for the skipped tests in the test suite. As tests using the NMRPipe showApod software are skipped and listed in this table, the text now includes 'software' in the list. ........ r25848 | bugman | 2014-09-15 17:00:53 +0200 (Mon, 15 Sep 2014) | 7 lines Shifted the checks for the Dasha and Modelfree4 software into the system test __init__() method. This is to bring this into the same design as the relaxation dispersion tests which require the NMRPipe showApod software. Now the test suite will list either Dasha or Modelfree4 in the skipped test table if they are not installed. ........ r25849 | tlinnet | 2014-09-15 23:04:25 +0200 (Mon, 15 Sep 2014) | 3 lines Adding another statistic method to plot for multi-data sets. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25850 | tlinnet | 2014-09-16 01:20:45 +0200 (Tue, 16 Sep 2014) | 3 lines More adding of matplotlib snippets for plotting intermediate data. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25851 | tlinnet | 2014-09-16 01:48:57 +0200 (Tue, 16 Sep 2014) | 3 lines Changing the range of plotting for statistics. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25852 | tlinnet | 2014-09-16 02:03:38 +0200 (Tue, 16 Sep 2014) | 3 lines More changes to plotting for statistics. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25853 | tlinnet | 2014-09-16 02:25:02 +0200 (Tue, 16 Sep 2014) | 3 lines Fix for axis limits when plotting stats. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25854 | tlinnet | 2014-09-16 02:44:55 +0200 (Tue, 16 Sep 2014) | 3 lines Fix for globbing, to prevent incidentally taking wrong intensity file. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25855 | tlinnet | 2014-09-16 07:15:04 +0200 (Tue, 16 Sep 2014) | 3 lines Correction to figure limits. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25856 | tlinnet | 2014-09-16 13:19:38 +0200 (Tue, 16 Sep 2014) | 3 lines Implemented writing out of statistics to file. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25857 | tlinnet | 2014-09-16 13:42:13 +0200 (Tue, 16 Sep 2014) | 3 lines Adding writing out of png files from matplotlib, when looking at statistics. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25858 | tlinnet | 2014-09-16 19:45:57 +0200 (Tue, 16 Sep 2014) | 5 lines Another math domain checking, if ref intensity is set to 0.0, then points are skipped, rather than raising an Error. This can happen for extremely bad dispersion data. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25859 | tlinnet | 2014-09-16 19:45:59 +0200 (Tue, 16 Sep 2014) | 5 lines Trying implementing flexibility, when data expected data is missing. This can be due failing of processing data, where a whole run of data is randomly skipped. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25860 | tlinnet | 2014-09-16 19:52:12 +0200 (Tue, 16 Sep 2014) | 3 lines Better check for math domain error in intensity propertionality. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25861 | tlinnet | 2014-09-16 19:52:13 +0200 (Tue, 16 Sep 2014) | 3 lines Removeal of initialised of dictionary, before data existence have been checked. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25897 | tlinnet | 2014-09-18 11:13:40 +0200 (Thu, 18 Sep 2014) | 3 lines Small fix for correct check of missing of data. Task #7826 (https://gna.org/task/index.php?7826): Write an python class for the repeated analysis of dispersion data. ........ r25898 | bugman | 2014-09-18 11:47:22 +0200 (Thu, 18 Sep 2014) | 17 lines Imported the Numdifftools 0.6.0 package into the relax source tree. This package is extremely useful for testing the implementation of gradients, Hessians, and Jacobians for all relax target functions. The numerical values from numdifftools can be compared to the directly calculated values. And for analysis types where the partial derivatives with respect to each model parameter are too complicated to calculated, or the derivatives are very complicated and hence slow, numdifftools can be used to provide a numerical estimate for direct use in the optimisation. The Numdifftools package is from https://pypi.python.org/pypi/Numdifftools and https://code.google.com/p/numdifftools/. The current version 0.6.0 has been placed into extern/numdifftools. This is only the numdifftools package within the official distribution files and the Python package setup.py file and associated files and directories have not been included. The package uses the New BSD licence (the revised licence with no advertising clause) which is compatible with the GPL v3 licence. ........ Added: branches/frame_order_cleanup/extern/numdifftools/ - copied from r25898, trunk/extern/numdifftools/ Modified: branches/frame_order_cleanup/ (props changed) branches/frame_order_cleanup/auto_analyses/relax_disp_repeat_cpmg.py branches/frame_order_cleanup/specific_analyses/relax_disp/optimisation.py branches/frame_order_cleanup/test_suite/system_tests/dasha.py branches/frame_order_cleanup/test_suite/system_tests/palmer.py branches/frame_order_cleanup/test_suite/system_tests/relax_disp.py branches/frame_order_cleanup/test_suite/test_suite_runner.py [This mail would be too long, it was shortened to contain the URLs only.] Modified: branches/frame_order_cleanup/auto_analyses/relax_disp_repeat_cpmg.py URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/auto_analyses/relax_disp_repeat_cpmg.py?rev=25899&r1=25898&r2=25899&view=diff Modified: branches/frame_order_cleanup/specific_analyses/relax_disp/optimisation.py URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/specific_analyses/relax_disp/optimisation.py?rev=25899&r1=25898&r2=25899&view=diff Modified: branches/frame_order_cleanup/test_suite/system_tests/dasha.py URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/dasha.py?rev=25899&r1=25898&r2=25899&view=diff Modified: branches/frame_order_cleanup/test_suite/system_tests/palmer.py URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/palmer.py?rev=25899&r1=25898&r2=25899&view=diff Modified: branches/frame_order_cleanup/test_suite/system_tests/relax_disp.py URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/relax_disp.py?rev=25899&r1=25898&r2=25899&view=diff Modified: branches/frame_order_cleanup/test_suite/test_suite_runner.py URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/test_suite_runner.py?rev=25899&r1=25898&r2=25899&view=diff _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-commits mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-commits
