Author: bugman
Date: Tue Dec 9 14:59:51 2014
New Revision: 27044
URL: http://svn.gna.org/viewcvs/relax?rev=27044&view=rev
Log:
Improvements for all of the tables of the relaxation dispersion chapter of the
manual.
The captions are now the full width (or height for rotated tables) of the page
in the PDF version of
the manual. The \latex{} command from the latex2html package has been used to
improve the HTML
versions of the tables by deactivating the landscape environment, the cmidrule
command, and the
caption width commands. This results in properly HTML formatted tables, rather
than creating a PNG
image for the whole table. These should significantly improve the tables in
the webpages
http://www.nmr-relax.com/manual/Comparison_of_dispersion_analysis_software.html,
http://www.nmr-relax.com/manual/The_relaxation_dispersion_auto_analysis.html,
and
http://www.nmr-relax.com/manual/Dispersion_model_summary.html.
Modified:
trunk/docs/latex/dispersion.tex
trunk/docs/latex/dispersion_models.tex
trunk/docs/latex/dispersion_params.tex
trunk/docs/latex/dispersion_software.tex
Modified: trunk/docs/latex/dispersion.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/dispersion.tex?rev=27044&r1=27043&r2=27044&view=diff
==============================================================================
--- trunk/docs/latex/dispersion.tex (original)
+++ trunk/docs/latex/dispersion.tex Tue Dec 9 14:59:51 2014
@@ -1792,11 +1792,12 @@
If you wish, the protocol can be converted into a new auto-analysis and
distributed as part of relax.
The relax test suite will ensure the protocol remains functional for the
lifetime of relax.
-\begin{landscape}
+\latex{\begin{landscape}}
\begin{center}
\begin{small}
% The longtable environment.
+\latex{\LTcapwidth=\textwidth}
\begin{longtable}{ll}
% Caption.
@@ -1887,7 +1888,7 @@
\end{longtable}
\end{small}
\end{center}
-\end{landscape}
+\latex{\end{landscape}}
% Dispersion curve insignificance.
Modified: trunk/docs/latex/dispersion_models.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/dispersion_models.tex?rev=27044&r1=27043&r2=27044&view=diff
==============================================================================
--- trunk/docs/latex/dispersion_models.tex (original)
+++ trunk/docs/latex/dispersion_models.tex Tue Dec 9 14:59:51 2014
@@ -1,4 +1,4 @@
-\begin{landscape}
+\latex{\begin{landscape}}
\begin{center}
\begin{small}
@@ -89,4 +89,4 @@
\end{longtable}
\end{small}
\end{center}
-\end{landscape}
+\latex{\end{landscape}}
Modified: trunk/docs/latex/dispersion_params.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/dispersion_params.tex?rev=27044&r1=27043&r2=27044&view=diff
==============================================================================
--- trunk/docs/latex/dispersion_params.tex (original)
+++ trunk/docs/latex/dispersion_params.tex Tue Dec 9 14:59:51 2014
@@ -1,4 +1,4 @@
-\begin{landscape}
+\latex{\begin{landscape}}
\begin{center}
\begin{small}
@@ -80,4 +80,4 @@
\end{longtable}
\end{small}
\end{center}
-\end{landscape}
+\latex{\end{landscape}}
Modified: trunk/docs/latex/dispersion_software.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/dispersion_software.tex?rev=27044&r1=27043&r2=27044&view=diff
==============================================================================
--- trunk/docs/latex/dispersion_software.tex (original)
+++ trunk/docs/latex/dispersion_software.tex Tue Dec 9 14:59:51 2014
@@ -2,11 +2,7 @@
\begin{small}
% The longtable environment.
-\begin{latexonly}
-\setlength\LTcapwidth{\textwidth}
-\setlength\LTleft{0pt}
-\setlength\LTright{0pt}
-\end{latexonly}
+\latex{\LTcapwidth=\textwidth}
\begin{longtable}{l@{\extracolsep{\fill}}ccccccccc}
% Caption.
@@ -34,16 +30,16 @@
% The models.
\vspace{-5pt} \\
\textbf{Dispersion models} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
\vspace{-5pt} \\
Base models \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
$\Rtwoeff/\Ronerhoprime$ & \no & \no & \no & \yes & \yes & \yes & \yes &
\no & \yes \\
No Rex & \no & \yes & \no & \yes & \yes & \no & \yes &
\no & \yes \\
\vspace{-5pt} \\
Single quantum (SQ) CPMG-type \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
LM63 & \yes & \no & \no & \yes & \no & \yes & \yes &
\no & \yes \\
LM63 3-site & \yes & \no & \no & \yes & \no & \no & \no &
\no & \yes \\
CR72 & \yes & \no & \no & \yes & \no & \yes & \yes &
\no & \yes \\
@@ -54,7 +50,7 @@
\vspace{-5pt} \\
MMQ (SQ, ZQ, DQ, \& MQ) CPMG-type \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
MMQ CR72 & \no & \yes & \no & \no & \yes & \no & ? &
\no & \yes \\
NS MMQ 2-site & \no & \yes & \no & \no & \no & \no & ? &
\no & \yes \\
NS MMQ 3-site linear & \no & \yes & \no & \no & \no & \no & ? &
\no & \yes \\
@@ -62,7 +58,7 @@
\vspace{-5pt} \\
$\Ronerho$-type \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
M61 & \no & \no & \no & \no & \no & \no & \no &
\no & \yes \\
DPL94 & \no & \no & \no & \no & \no & \no & \no &
\no & \yes \\
TP02 & \no & \yes & \no & \no & \no & \no & \no &
\no & \yes \\
@@ -77,7 +73,7 @@
\midrule
\vspace{-5pt} \\
\textbf{General features} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Parallelisation via MPI for running on clusters & \no & \no & \no & \no &
\no & \no & \no & \no & \yes \\
Off-resonance effects (CPMG-type data) & \no & \no & \yes & \no &
\no & \no & \no & \no & \no \\
Off-resonance effects ($\Ronerho$-type data) & \no & \yes & \no & \no &
\no & \no & \no & \no & \yes \\
@@ -91,7 +87,7 @@
\vspace{-5pt} \\
\textbf{User interface} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Graphical user interface (GUI) & \no & \no & \no & \yes &
\yes & \no & \no & \no & \yes \\
Web user interface (Web UI) & \no & \no & \no & \no &
\no & \yes & \no & \no & \no \\
Scripting user interface (Script UI) & \no & \yes & \yes & \no &
\no & \yes & \yes & \no & \yes \\
@@ -101,7 +97,7 @@
\vspace{-5pt} \\
\textbf{Optimisation} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Grid search algorithm & \yes & \no & \no & \yes &
\yes & \yes & \yes & \no & \yes \\
Grid search (via scripting) & \no & \no & \yes & \no &
\no & \no & \no & \no & \no \\
Nelder-Mead simplex algorithm & \no & \no & \no & \no &
\no & \no & \no & \no & \yes \\
@@ -113,7 +109,7 @@
\vspace{-5pt} \\
\textbf{Error propagation} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Covariance matrix (lowest quality) & \yes & \yes & \yes & \no &
\yes & \yes & \yes & \no & \no \\
Jackknife simulations (for missing errors) & \yes & \no & \no & \no &
\no & \no & \yes & \no & \no \\
Bootstrapping simulations (false errors) & \no & \no & \no & \no &
\no & \no & \no & \no & \no \\
@@ -121,7 +117,7 @@
\vspace{-5pt} \\
\textbf{Inbuilt statistical comparisons} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Akaike's Information Criterion (AIC) & \no & \no & \no & \yes &
\no & \no & \no & \no & \yes \\
Small sample size AIC (AICc) & \no & \no & \no & \yes &
\no & \no & \no & \no & \yes \\
Bayesian Information Criterion (BIC) & \no & \no & \no & \no &
\no & \no & \no & \no & \yes \\
@@ -129,13 +125,13 @@
\vspace{-5pt} \\
\textbf{Data and model testing} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Insignificant dispersion curve tests & \no & \no & \no & \yes &
\no & \no & \no & \no & \yes \\
Model elimination tests & \no & \no & \no & \no &
\no & \no & \no & \no & \yes \\
\vspace{-5pt} \\
\textbf{Programming languages} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
Python & \no & \no & \no & \yes & \no & \yes & \no &
\yes & \yes \\
C & \no & \yes & \yes & \no & \no & \no & \yes &
\no & \yes \\
Perl & \no & \no & \no & \no & \no & \no & \yes &
\no & \no \\
@@ -145,7 +141,7 @@
\vspace{-5pt} \\
\textbf{Open source licencing} \\
-\cmidrule(lr){1-1}
+\latex{\cmidrule(lr){1-1}}
GNU General Public Licence (version 2+) & \yes & \no & \no & \no & \no
& \no & \no & \no & \no \\
GNU General Public Licence (version 3+) & \no & \no & \no & \yes & \yes
& \no & \no & \yes & \yes \\
Open source infrastructure & \no & \no & \no & \yes & \yes
& \no & \no & \yes & \yes \\
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