Author: bugman
Date: Thu Dec 18 12:05:07 2014
New Revision: 27127
URL: http://svn.gna.org/viewcvs/relax?rev=27127&view=rev
Log:
Created the lib.plotting API function correlation_matrix().
This is the lib.plotting.api.correlation_matrix() function. It will be used
for the visualisation
of rank-2 correlation matrices. The current basic API design here uses a
dictionary of backend
functions (currently empty) for calling the backend.
Added:
trunk/lib/plotting/api.py
Modified:
trunk/lib/plotting/__init__.py
Modified: trunk/lib/plotting/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/lib/plotting/__init__.py?rev=27127&r1=27126&r2=27127&view=diff
==============================================================================
--- trunk/lib/plotting/__init__.py (original)
+++ trunk/lib/plotting/__init__.py Thu Dec 18 12:05:07 2014
@@ -22,5 +22,7 @@
# Package docstring.
"""The relax library plotting package - a library of functions for plotting
data via different software packages."""
+# The package content list.
__all__ = [
+ 'api'
]
Added: trunk/lib/plotting/api.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/lib/plotting/api.py?rev=27127&view=auto
==============================================================================
--- trunk/lib/plotting/api.py (added)
+++ trunk/lib/plotting/api.py Thu Dec 18 12:05:07 2014
@@ -0,0 +1,53 @@
+###############################################################################
+# #
+# Copyright (C) 2014 Edward d'Auvergne #
+# #
+# This file is part of the program relax (http://www.nmr-relax.com). #
+# #
+# This program is free software: you can redistribute it and/or modify #
+# it under the terms of the GNU General Public License as published by #
+# the Free Software Foundation, either version 3 of the License, or #
+# (at your option) any later version. #
+# #
+# This program is distributed in the hope that it will be useful, #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
+# GNU General Public License for more details. #
+# #
+# You should have received a copy of the GNU General Public License #
+# along with this program. If not, see <http://www.gnu.org/licenses/>. #
+# #
+###############################################################################
+
+# Module docstring.
+"""The relax library plotting API."""
+
+# relax module imports.
+from lib.errors import RelaxError
+
+
+def correlation_matrix(format=None, matrix=None, labels=None, file=None,
dir=None, force=False):
+ """Plotting API function for representing correlation matrices.
+
+ @keyword format: The specific backend to use.
+ @type format: str
+ @keyword matrix: The correlation matrix. This must be a square matrix.
+ @type matrix: numpy rank-2 array.
+ @keyword labels: The labels for each element of the matrix. The same
label is assumed for each [i, i] pair in the matrix.
+ @type labels: list of str
+ @keyword file: The name of the file to create.
+ @type file: str
+ @keyword dir: The directory where the PDB file will be placed. If
set to None, then the file will be placed in the current directory.
+ @type dir: str or None
+ """
+
+ # The supported formats.
+ function = {
+ }
+
+ # Unsupported format.
+ if format not in function:
+ raise RelaxError("The plotting of correlation matrix data using the
'%s' format is not supported." % format)
+
+ # Call the backend function.
+ function[format](matrix=matrix, labels=labels, file=file, dir=dir,
force=force)
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