Author: bugman
Date: Wed Jan 21 12:21:53 2015
New Revision: 27255
URL: http://svn.gna.org/viewcvs/relax?rev=27255&view=rev
Log:
Corrected the spelling of the BLOSUM62 matrix in
lib.sequence_alignment.substitution_matrices.
Modified:
trunk/lib/sequence_alignment/substitution_matrices.py
Modified: trunk/lib/sequence_alignment/substitution_matrices.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/lib/sequence_alignment/substitution_matrices.py?rev=27255&r1=27254&r2=27255&view=diff
==============================================================================
--- trunk/lib/sequence_alignment/substitution_matrices.py (original)
+++ trunk/lib/sequence_alignment/substitution_matrices.py Wed Jan 21
12:21:53 2015
@@ -26,8 +26,8 @@
from numpy import array, int16
-BLOSSUM62_SEQ = ['ARNDCQEGHILKMFPSTWYVBZX*']
-BLOSSUM62 = array([
+BLOSUM62_SEQ = ['ARNDCQEGHILKMFPSTWYVBZX*']
+BLOSUM62 = array([
[ 4, -1, -2, -2, 0, -1, -1, 0, -2, -1, -1, -1, -1, -2, -1, 1, 0, -3,
-2, 0, -2, -1, 0, -4],
[-1, 5, 0, -2, -3, 1, 0, -2, 0, -3, -2, 2, -1, -3, -2, -1, -1, -3,
-2, -3, -1, 0, -1, -4],
[-2, 0, 6, 1, -3, 0, 0, 0, 1, -3, -3, 0, -2, -3, -2, 1, 0, -4,
-2, -3, 3, 0, -1, -4],
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