Author: bugman
Date: Mon Jan 26 15:20:09 2015
New Revision: 27308
URL: http://svn.gna.org/viewcvs/relax?rev=27308&view=rev
Log:
Python 3 fix for the lib.sequence_alignment.align_protein module.
The string.upper() function no longer exists.
Modified:
trunk/lib/sequence_alignment/align_protein.py
Modified: trunk/lib/sequence_alignment/align_protein.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/lib/sequence_alignment/align_protein.py?rev=27308&r1=27307&r2=27308&view=diff
==============================================================================
--- trunk/lib/sequence_alignment/align_protein.py (original)
+++ trunk/lib/sequence_alignment/align_protein.py Mon Jan 26 15:20:09 2015
@@ -23,7 +23,6 @@
"""General sequence alignment functions."""
# Python module imports.
-from string import upper
import sys
# relax module imports.
@@ -64,8 +63,8 @@
raise RelaxError("The substitution matrix '%s' is unknown, it must be
one of %s." % (matrix, allowed_matrices))
# Capitalise the sequences.
- sequence1 = upper(sequence1)
- sequence2 = upper(sequence2)
+ sequence1 = sequence1.upper()
+ sequence2 = sequence2.upper()
# Initial printout.
sys.stdout.write("\nPairwise protein alignment.\n")
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