Author: bugman
Date: Mon Jan 26 17:45:27 2015
New Revision: 27314
URL: http://svn.gna.org/viewcvs/relax?rev=27314&view=rev
Log:
Changed the gap opening penalty to 10 in the N-state model structure_align.py
system test script.
Modified:
trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
Modified: trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py?rev=27314&r1=27313&r2=27314&view=diff
==============================================================================
--- trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
(original)
+++ trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
Mon Jan 26 17:45:27 2015
@@ -17,7 +17,7 @@
structure.read_pdb('%s.pdb' % code, dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'structures')
# Backbone heavy atom align all structures.
-structure.align(pipes=codes, atom_id='@N,C,CA,O', method='fit to first',
matrix='BLOSUM62', gap_open_penalty=1.0, gap_extend_penalty=1.0,
end_gap_open_penalty=0.0, end_gap_extend_penalty=0.0)
+structure.align(pipes=codes, atom_id='@N,C,CA,O', method='fit to first',
matrix='BLOSUM62', gap_open_penalty=10.0, gap_extend_penalty=1.0,
end_gap_open_penalty=0.0, end_gap_extend_penalty=0.0)
# Write out the result.
structure.write_pdb('devnull', force=True)
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-commits mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-commits
