Author: bugman
Date: Thu Jan 29 13:24:59 2015
New Revision: 27346
URL: http://svn.gna.org/viewcvs/relax?rev=27346&view=rev
Log:
Expanded the docstring of the
Test_align_protein.test_align_multiple_from_pairwise unit test.
This is from the _lib._sequence_alignment.test_align_protein unit test module.
Modified:
trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py
Modified:
trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py?rev=27346&r1=27345&r2=27346&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py
(original)
+++ trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py
Thu Jan 29 13:24:59 2015
@@ -39,12 +39,36 @@
- 'ADQLTEEQVDADGNGTIDFPEFLTMMARKM',
- 'LTEEQMINEVDAGNGTIDFPEFLTMMAR'.
- The result should be:
-
- - '----TEEQ----VDADG-GT--------------',
- - 'ADQLTEEQ----VDADGNGTIDFPEFLTMMARKM',
- - '
----LTEEQMINEVDA-GNGTIDFPEFLTMMAR--'.
+ The result should be::
+
+ Pairwise protein alignment.
+ Substitution matrix: BLOSUM62
+ Gap opening penalty: 5.0
+ Gap extend penalty: 1.0
+
+ Input sequence 1: TEEQVDADGGT
+ Input sequence 2: ADQLTEEQVDADGNGTIDFPEFLTMMARKM
+
+ Aligned sequence 1: ----TEEQVDADG-GT--------------
+ Aligned sequence 2: ADQLTEEQVDADGNGTIDFPEFLTMMARKM
+ ********* **
+
+
+ Pairwise protein alignment.
+ Substitution matrix: BLOSUM62
+ Gap opening penalty: 5.0
+ Gap extend penalty: 1.0
+
+ Input sequence 1: TEEQVDADGGT
+ Input sequence 2: LTEEQMINEVDAGNGTIDFPEFLTMMAR
+
+ Aligned sequence 1: -TEEQ----VDADGGT------------
+ Aligned sequence 2: LTEEQMINEVDAGNGTIDFPEFLTMMAR
+ **** *** **
+
+ ----TEEQ----VDADG-GT--------------
+ ADQLTEEQ----VDADGNGTIDFPEFLTMMARKM
+ ---LTEEQMINEVDA-GNGTIDFPEFLTMMAR--
"""
# The sequences.
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