Author: bugman
Date: Thu Jan 29 15:39:38 2015
New Revision: 27355
URL: http://svn.gna.org/viewcvs/relax?rev=27355&view=rev
Log:
Fix for the Test_msa.test_central_star unit test.
This is from the _lib._sequence_alignment.test_msa unit test module. Some of
the real gap matrix
indices were incorrect.
Modified:
trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py
Modified: trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py?rev=27355&r1=27354&r2=27355&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py
(original)
+++ trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py Thu Jan
29 15:39:38 2015
@@ -75,9 +75,6 @@
seq1 = 'TEEQVDADGGT'
seq2 = 'ADQLTEEQVDADGNGTIDFPEFLTMMARKM'
seq3 = 'LTEEQMINEVDAGNGTIDFPEFLTMMAR'
- print(seq1)
- print(seq2)
- print(seq3)
# Perform the alignment.
strings, gaps = central_star([seq1, seq2, seq3], matrix='BLOSUM62',
gap_open_penalty=5.0, gap_extend_penalty=1.0)
@@ -97,7 +94,7 @@
real_gaps[0, i] = 1
for i in range(8, 12):
real_gaps[1, i] = 1
- for i in (range(3) + [15, 33, 34]):
+ for i in (range(3) + [15, 32, 33]):
real_gaps[2, i] = 1
for i in range(3):
for j in range(34):
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