Author: bugman
Date: Fri Jan 30 17:34:36 2015
New Revision: 27398
URL: http://svn.gna.org/viewcvs/relax?rev=27398&view=rev
Log:
The data store ds.sequence_alignment object is now being treated as special and
is blacklisted.
The object is now explicitly recreated in the data store from_xml() method.
Modified:
trunk/data_store/__init__.py
Modified: trunk/data_store/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/data_store/__init__.py?rev=27398&r1=27397&r2=27398&view=diff
==============================================================================
--- trunk/data_store/__init__.py (original)
+++ trunk/data_store/__init__.py Fri Jan 30 17:34:36 2015
@@ -32,6 +32,7 @@
# relax module imports.
from data_store.gui import Gui
from data_store.pipe_container import PipeContainer
+from data_store.seq_align import Sequence_alignments
import pipe_control
from lib.compat import builtins
from lib.errors import RelaxError, RelaxPipeError, RelaxNoPipeError
@@ -405,8 +406,8 @@
# Objects which should be in here.
blacklist = [
- 'pipe_bundles',
- 'relax_gui'
+ 'pipe_bundles',
+ 'relax_gui'
]
# An object has been added to the data store.
@@ -479,8 +480,17 @@
if gui_nodes:
self.relax_gui.from_xml(gui_nodes[0], file_version=file_version)
+ # Get the sequence alignment nodes.
+ seq_align_nodes = relax_node.getElementsByTagName('sequence_alignment')
+ if seq_align_nodes:
+ # Initialise the object.
+ self.sequence_alignment = Sequence_alignments()
+
+ # Populate it.
+ self.sequence_alignment.from_xml(seq_align_nodes[0],
file_version=file_version)
+
# Recreate all the data store data structures.
- xml_to_object(relax_node, self, file_version=file_version,
blacklist=['pipe', 'relax_gui'])
+ xml_to_object(relax_node, self, file_version=file_version,
blacklist=['pipe', 'relax_gui, sequence_alignment'])
# Get the pipe nodes.
pipe_nodes = relax_node.getElementsByTagName('pipe')
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