Author: bugman
Date: Sat Jan 31 10:13:27 2015
New Revision: 27408
URL: http://svn.gna.org/viewcvs/relax?rev=27408&view=rev
Log:
Fix for the structure.sequence_alignment user function.
The alignment data should be stored in ds.sequence_alignments rather than
ds.sequence_alignment.
Modified:
trunk/pipe_control/structure/main.py
Modified: trunk/pipe_control/structure/main.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/main.py?rev=27408&r1=27407&r2=27408&view=diff
==============================================================================
--- trunk/pipe_control/structure/main.py (original)
+++ trunk/pipe_control/structure/main.py Sat Jan 31 10:13:27 2015
@@ -1199,11 +1199,11 @@
strings, gaps = central_star(one_letter_codes,
algorithm=pairwise_algorithm, matrix=matrix, gap_open_penalty=gap_open_penalty,
gap_extend_penalty=gap_extend_penalty,
end_gap_open_penalty=end_gap_open_penalty,
end_gap_extend_penalty=end_gap_extend_penalty)
# Set up the data store object.
- if not hasattr(ds, 'sequence_alignment'):
- ds.sequence_alignment = Sequence_alignments()
+ if not hasattr(ds, 'sequence_alignments'):
+ ds.sequence_alignments = Sequence_alignments()
# Store the alignment.
- ds.sequence_alignment.add(object_ids=object_id_list, models=model_list,
molecules=molecule_list, sequences=one_letter_codes, strings=strings,
gaps=gaps, msa_algorithm=msa_algorithm, pairwise_algorithm=pairwise_algorithm,
matrix=matrix, gap_open_penalty=gap_open_penalty,
gap_extend_penalty=gap_extend_penalty,
end_gap_open_penalty=end_gap_open_penalty,
end_gap_extend_penalty=end_gap_extend_penalty)
+ ds.sequence_alignments.add(object_ids=object_id_list, models=model_list,
molecules=molecule_list, sequences=one_letter_codes, strings=strings,
gaps=gaps, msa_algorithm=msa_algorithm, pairwise_algorithm=pairwise_algorithm,
matrix=matrix, gap_open_penalty=gap_open_penalty,
gap_extend_penalty=gap_extend_penalty,
end_gap_open_penalty=end_gap_open_penalty,
end_gap_extend_penalty=end_gap_extend_penalty)
def set_vector(spin=None, xh_vect=None):
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