Author: bugman
Date: Sat Jan 31 17:33:38 2015
New Revision: 27431
URL: http://svn.gna.org/viewcvs/relax?rev=27431&view=rev
Log:
Modified the structure.sequence_alignment user function arguments.
The pairwise_algorithm and matrix arguments can no be None, and they default to
None.
Modified:
trunk/user_functions/structure.py
Modified: trunk/user_functions/structure.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/user_functions/structure.py?rev=27431&r1=27430&r2=27431&view=diff
==============================================================================
--- trunk/user_functions/structure.py (original)
+++ trunk/user_functions/structure.py Sat Jan 31 17:33:38 2015
@@ -1201,23 +1201,25 @@
)
uf.add_keyarg(
name = "pairwise_algorithm",
- default = "NW70",
+ default = None,
py_type = "str",
desc_short = "pairwise alignment algorithm",
desc = "The pairwise alignment algorithm to align each pair of sequences.",
wiz_element_type = "combo",
wiz_combo_choices = ["NW70"],
- wiz_read_only = True
+ wiz_read_only = True,
+ can_be_none = True
)
uf.add_keyarg(
name = "matrix",
- default = "BLOSUM62",
+ default = None,
py_type = "str",
desc_short = "substitution matrix",
desc = "The substitution matrix to use in the pairwise sequence alignment
algorithm.",
wiz_element_type = "combo",
wiz_combo_choices = ["BLOSUM62", "PAM250", "NUC 4.4"],
- wiz_read_only = True
+ wiz_read_only = True,
+ can_be_none = True
)
uf.add_keyarg(
name = "gap_open_penalty",
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