Author: tlinnet Date: Wed May 27 03:09:40 2015 New Revision: 27836 URL: http://svn.gna.org/viewcvs/relax?rev=27836&view=rev Log: In the collection bash script, removes spins which have not been fitted.
Task #7826 (https://gna.org/task/?7826): Write an python class for the repeated analysis of dispersion data. Modified: trunk/auto_analyses/relax_disp_repeat_cpmg.py Modified: trunk/auto_analyses/relax_disp_repeat_cpmg.py URL: http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/relax_disp_repeat_cpmg.py?rev=27836&r1=27835&r2=27836&view=diff ============================================================================== --- trunk/auto_analyses/relax_disp_repeat_cpmg.py (original) +++ trunk/auto_analyses/relax_disp_repeat_cpmg.py Wed May 27 03:09:40 2015 @@ -2795,14 +2795,14 @@ file_obj.write('FILES=(*_${SEARCH}.out)' + '\n') file_obj.write('readarray -t FILESSORT < <(for a in "${FILES[@]}"; do echo "$a"; done | sort -Vr)' + '\n') file_obj.write('# Skip the first two lines of header' + '\n') - file_obj.write("tail -n+3 ${FILESSORT[0]} | sed 's,^# ,,' | awk '{print $2,$3,$5}' | column -t > collect_${SEARCH}.tmp" + '\n') + file_obj.write("tail -n+3 ${FILESSORT[0]} | sed 's,^# ,,' | grep -v "None None" | awk '{print $2,$3,$5}' | column -t > collect_${SEARCH}.tmp" + '\n') file_obj.write('# Make array' + '\n') file_obj.write('ACUT=(collect_${SEARCH}.tmp)' + '\n') file_obj.write('for f in "${FILESSORT[@]}"; do' + '\n') file_obj.write(' FNAME="${f%.*}"' + '\n') file_obj.write(' NI=`echo $f | cut -d"_" -f1`' + '\n') file_obj.write(' echo "Processing $f with NI=$NI"' + '\n') - file_obj.write(' tail -n+3 $f | sed "s,^# ,," | sed "s,value,${NI}," | sed "s,error,${NI}," | awk %s{print $6,$7}%s | column -t > ${FNAME}.tmp'%("'","'") + '\n') + file_obj.write(' tail -n+3 $f | sed "s,^# ,," | grep -v "None None" | sed "s,value,${NI}," | sed "s,error,${NI}," | awk %s{print $6,$7}%s | column -t > ${FNAME}.tmp'%("'","'") + '\n') file_obj.write(' ACUT+=(${FNAME}.tmp)' + '\n') file_obj.write('done' + '\n') file_obj.write('paste "${ACUT[@]}" | column -t > collect_${SEARCH}.txt' + '\n') _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-commits mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-commits
