Author: tlinnet
Date: Sat Nov 21 15:08:17 2015
New Revision: 28076
URL: http://svn.gna.org/viewcvs/relax?rev=28076&view=rev
Log:
Made additional check in sequence reading, that "nan" values are skipped.
Modified:
trunk/lib/sequence.py
Modified: trunk/lib/sequence.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/lib/sequence.py?rev=28076&r1=28075&r2=28076&view=diff
==============================================================================
--- trunk/lib/sequence.py (original)
+++ trunk/lib/sequence.py Sat Nov 21 15:08:17 2015
@@ -24,6 +24,7 @@
"""Module for handling the molecule, residue, and spin sequence data."""
# Python module imports.
+from math import isnan
from warnings import warn
# relax module imports.
@@ -310,6 +311,11 @@
else:
value = float(line[data_col-1])
+ # If it a float, test if is nan.
+ if isnan(value):
+ warn(RelaxWarning("The value is 'nan', skipping the
line %s" % line))
+ continue
+
# Bad data.
except ValueError:
warn(RelaxWarning("Invalid data, skipping the line %s" % line))
@@ -326,6 +332,11 @@
# A float.
else:
error = float(line[error_col-1])
+
+ # If it a float, test if is nan.
+ if isnan(error):
+ warn(RelaxWarning("The error is 'nan', skipping the
line %s" % line))
+ continue
# Bad data.
except ValueError:
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-commits mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-commits
