URL:
<http://gna.org/bugs/?7540>
Summary: pdb.load() doesn't exist (?)
Project: relax
Submitted by: viochemist
Submitted on: Thursday 10/26/2006 at 15:31
Category: relax's source code
Priority: 5 - Normal
Severity: 2 - Minor
Status: None
Privacy: Public
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Release: Repository: 1.3 line
Operating System: All systems
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Details:
I ran into this bug in the Repository 1.3 line:
The first run of each of the models finished fine, however it was unable to
load them for the next iterations. Here's the error I get for ellipsoid
(they're all the same though):
Traceback (most recent call last):
File "relax", line 458, in ?
Relax()
File "relax", line 170, in __init__
self.interpreter.run()
File "/local/home/viochem/relax/prompt/interpreter.py", line 213, in run
run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
File "/local/home/viochem/relax/prompt/interpreter.py", line 388, in
run_script
console.interact (intro, local, script_file, quit)
File "/local/home/viochem/relax/prompt/interpreter.py", line 340, in
interact_script
execfile(script_file, local)
File "full_analysis-ellipsoid.py", line 437, in ?
Main()
File "full_analysis-ellipsoid.py", line 227, in __init__
self.load_tensor()
File "full_analysis-ellipsoid.py", line 360, in load_tensor
results.read('tensor', 'results', self.diff_model + '/init')
File "/local/home/viochem/relax/prompt/results.py", line 122, in read
self.__relax__.generic.results.read(run=run, file=file, directory=dir,
format=format)
File "/local/home/viochem/relax/generic_fns/results.py", line 132, in read
self.read_function(run, file_data, print_flag)
File "/local/home/viochem/relax/specific_fns/model_free.py", line 3404, in
read_columnar_results
if self.read_columnar_pdb(print_flag):
File "/local/home/viochem/relax/specific_fns/model_free.py", line 3256, in
read_columnar_pdb
self.relax.generic.pdb.load(run=self.run, file=pdb, model=pdb_model,
heteronuc=pdb_heteronuc, proton=pdb_proton, calc_vectors=0, fail=0,
print_flag=print_flag)
AttributeError: PDB instance has no attribute 'load'
Alex
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