Hi Alex, I can't reproduce this with my own data, so I suspect its something to do with either your data or the way relax is handling it. There are a few things you could do to try and track this down. First try running your script with the --debug flag. This should cause relax to save state in response to the error. You can then load this state in an interactive relax session and explore the data to find any sign of the problems. You will want to type:
self.relax.data.res[run_name][index] (where index is any integer from 0 to the number of residues you have) This will give you all the residue specific data for this residue. Check whether chi2 is finite (in which case that residue is probably not the cause of your problems), and check that the relax_data and relax_error fields match your expectations. Hope that helps, Chris On Mon, 2006-11-06 at 16:38 +0100, Alex Hansen wrote: > URL: > <http://gna.org/bugs/?7641> > > Summary: Infinite Chi2 warning > Project: relax > Submitted by: viochemist > Submitted on: Monday 11/06/2006 at 10:38 > Category: relax's source code > Priority: 5 - Normal > Severity: 3 - Normal > Status: None > Privacy: Public > Assigned to: None > Originator Name: > Originator Email: > Open/Closed: Open > Release: Repository: 1.3 line > Operating System: All systems > > _______________________________________________________ > > Details: > > After a short hiatus, and seeing the local_tm fix, I updated my 1.3 line to > revision 2754. When I run the local_tm calcuation now, I receive a warning > of: > > RelaxError: The invalid chi-squared floating point value of infinity has > occurred. > > And, since local_tm fails, all subsequent models also fail. Any thoughts? > > > > _______________________________________________________ > > Carbon-Copy List: > > CC Address | Comment > ------------------------------------+----------------------------- > Available only the item webpage | Submitted the item > > > > > _______________________________________________________ > > Reply to this item at: > > <http://gna.org/bugs/?7641> > > _______________________________________________ > Message sent via/by Gna! > http://gna.org/ > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
