Hi, I have now fixed the bug. Carl, would you be able to test the fixes? I unfortunately cannot replicate the bug as the relaxation data you use is not available (however if absolutely necessary I could extract it from the saved file). To check it you need the program Subversion installed and then either type:
svn co svn://svn.gna.org/svn/relax/1.2 relax-1.2 or: svn co http://svn.gna.org/svn/relax/1.2 relax-1.2 The resultant code in the 'relax-1.2' directory can then be directly run using the script. I'll attempt a fix for your other bug report and then maybe release relax-1.2.11. Cheers, Edward On 5/7/07, Edward d'Auvergne <[EMAIL PROTECTED]> wrote: > Hi Carl, > > I'm sorry about the delayed response. I have just moved from > Australia to Germany to start a postdoc and have been too busy to > reply to any email until now. Thank you for the bug report. I've > tried replicating the bug you have identified using your attached > files but unfortunately I have recently upgraded my system and > realised that relax doesn't function using Python 2.5. The relax > error system is completely broken. I'll fix that then try to fix your > problem. > > Cheers, > > Edward > > > > On 4/25/07, anonymous <[EMAIL PROTECTED]> wrote: > > > > URL: > > <http://gna.org/bugs/?8996> > > > > Summary: Bugs in palmer.py > > Project: relax > > Submitted by: None > > Submitted on: Wednesday 04/25/2007 at 12:32 CEST > > Category: relax's source code > > Severity: 3 - Normal > > Priority: 5 - Normal > > Status: None > > Privacy: Public > > Assigned to: None > > Originator Name: Carl Diehl > > Originator Email: [EMAIL PROTECTED] > > Open/Closed: Open > > Discussion Lock: Any > > Release: 1.2.10 > > Operating System: GNU/Linux > > > > _______________________________________________________ > > > > Details: > > > > The following bug were encountered while running the palmer.py script with > > stage=2, stage=1 worked fine with the original data. > > > > > > relax> run.create(run='aic', run_type='mf') > > > > relax> model_selection(method='AIC', modsel_run='aic', runs=None) > > AIC model selection. > > > > Instance 0. > > > > Run Num_params_(k) Num_data_sets_(n) Chi2 > > Criterion > > > > The model from the run None has been selected. > > > > Instance 1. > > > > Run Num_params_(k) Num_data_sets_(n) Chi2 > > Criterion > > m1 1 6 4.17590 > > 6.17590 > > m2 2 6 3.77440 > > 7.77440 > > m3 2 6 4.17590 > > 8.17590 > > m4 3 6 3.77440 > > 9.77440 > > m5 3 6 6.09960 > > 12.09960 > > > > The model from the run 'm1' has been selected. > > > > relax> results.write(run='aic', file='results', dir='aic', force=1, > > format='columnar', compress_type=1) > > Opening the file 'aic/results.bz2' for writing. > > Traceback (most recent call last): > > File "/home/matsl/carl/apps/relax-1.2.10/relax", line 454, in ? > > Relax() > > File "/home/matsl/carl/apps/relax-1.2.10/relax", line 166, in __init__ > > self.interpreter.run() > > File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 213, > > in run > > run_script(intro=self.relax.intro_string, local=self.local, > > script_file=self.relax.script_file, quit=1) > > File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 388, > > in run_script > > console.interact(intro, local, script_file, quit) > > File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 340, > > in interact_script > > execfile(script_file, local) > > File "palmer.py", line 132, in ? > > exec_stage_2(runs) > > File "palmer.py", line 85, in exec_stage_2 > > results.write(run=name, file='results', force=1) > > File "/home/matsl/carl/apps/relax-1.2.10/prompt/results.py", line 201, in > > write > > self.__relax__.generic.results.write(run=run, file=file, directory=dir, > > force=force, format=format, compress_type=compress_type) > > File "/home/matsl/carl/apps/relax-1.2.10/generic_fns/results.py", line > > 166, > > in write > > self.write_function(results_file, run) > > File "/home/matsl/carl/apps/relax-1.2.10/specific_fns/model_free.py", line > > 4980, in write_columnar_results > > self.write_columnar_line(file=file, num=data.num, name=data.name, > > select=data.select, data_set='error', nucleus=nucleus, model=model, > > equation=equation, params=params, param_set=self.param_set, s2=s2, s2f=s2f, > > s2s=s2s, local_tm=local_tm, te=te, tf=tf, ts=ts, rex=rex, r=r, csa=csa, > > diff_type=diff_type, diff_params=diff_params, pdb=pdb, pdb_model=pdb_model, > > pdb_heteronuc=data.heteronuc, pdb_proton=data.proton, xh_vect=xh_vect, > > ri_labels=ri_labels, remap_table=remap_table, frq_labels=frq_labels, > > frq=frq, > > ri=ri, ri_error=ri_error) > > AttributeError: Element instance has no attribute 'heteronuc' > > > > > > > > > > _______________________________________________________ > > > > File Attachments: > > > > > > ------------------------------------------------------- > > Date: Wednesday 04/25/2007 at 12:32 CEST Name: palmer.py Size: 4kB By: > > None > > > > <http://gna.org/bugs/download.php?file_id=2268> > > ------------------------------------------------------- > > Date: Wednesday 04/25/2007 at 12:32 CEST Name: stage1.save.bz2 Size: 3kB > > By: None > > > > <http://gna.org/bugs/download.php?file_id=2269> > > > > _______________________________________________________ > > > > Reply to this item at: > > > > <http://gna.org/bugs/?8996> > > > > _______________________________________________ > > Message sent via/by Gna! > > http://gna.org/ > > > > > > _______________________________________________ > > relax (http://nmr-relax.com) > > > > This is the relax-devel mailing list > > [email protected] > > > > To unsubscribe from this list, get a password > > reminder, or change your subscription options, > > visit the list information page at > > https://mail.gna.org/listinfo/relax-devel > > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
