Hi, I've tried for a while but can't find how to pass the directory argument from the palmer system test to its associated script and then to the palmer.create() and palmer.execute() functions.
Does self.relax.interpreter.run() start a new instance of Python ? How can one variable be passed through this ? I am a bit confused... and need help... Regards, Séb Edward d'Auvergne wrote: > Hi, > > For this test, I would avoid changing directories. The original > directory is the directory from which relax was launched, then it > changes to the temporary directory, and finally jumps to the relax > base directory. However if you pass directory arguments to the > palmer.execute() user function, then this directory switching will be > done anyway (although returning to the original directory rather than > the relax base directory). Passing the directory argument (or the > directory in front of the file name) to the other palmer user > functions will not cause directory changes, but will access files in > that directory. So it shouldn't be necessary to switch directories in > the system tests. > > Regards, > > Edward > > > > On Wed, Jul 30, 2008 at 10:37 PM, <[EMAIL PROTECTED]> wrote: > >> Author: semor >> Date: Wed Jul 30 22:37:09 2008 >> New Revision: 7040 >> >> URL: http://svn.gna.org/viewcvs/relax?rev=7040&view=rev >> Log: >> Changed the temporary directory to the system's default location using >> 'tempfile.mkdtemp'. >> >> This is in response to a post of Edward d'Auvergne at: >> https://mail.gna.org/public/relax-devel/2008-07/msg00048.html (message ID: >> [EMAIL PROTECTED]). >> >> >> Modified: >> 1.3/test_suite/system_tests/palmer.py >> 1.3/test_suite/system_tests/scripts/palmer.py >> >> Modified: 1.3/test_suite/system_tests/palmer.py >> URL: >> http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/palmer.py?rev=7040&r1=7039&r2=7040&view=diff >> ============================================================================== >> --- 1.3/test_suite/system_tests/palmer.py (original) >> +++ 1.3/test_suite/system_tests/palmer.py Wed Jul 30 22:37:09 2008 >> @@ -22,12 +22,14 @@ >> >> # Python module imports. >> import sys >> +from os import chdir >> from shutil import rmtree >> +from tempfile import mkdtemp >> from unittest import TestCase >> >> # relax module imports. >> from data import Relax_data_store; ds = Relax_data_store() >> -from relax_io import mkdir_nofail, test_binary >> +from relax_io import test_binary >> >> >> class Palmer(TestCase): >> @@ -43,7 +45,7 @@ >> self.relax.interpreter._Pipe.create('palmer', 'mf') >> >> # Create a temporary directory for ModelFree4 outputs. >> - mkdir_nofail(sys.path[-1] + >> '/test_suite/system_tests/data/temp_palmer') >> + self.temp_MF_dir = mkdtemp() >> >> >> def tearDown(self): >> @@ -52,7 +54,7 @@ >> ds.__reset__() >> >> # Remove the temporary directory created during the execution of the >> test_palmer() function. >> - rmtree(sys.path[-1] + '/test_suite/system_tests/data/temp_palmer/') >> + rmtree(self.temp_MF_dir) >> >> >> def test_palmer(self): >> @@ -64,5 +66,11 @@ >> except: >> return >> >> + # Move to the temporary directory for ModelFree4 outputs. >> + chdir(self.temp_MF_dir) >> + >> # Execute the script. >> self.relax.interpreter.run(script_file=sys.path[-1] + >> '/test_suite/system_tests/scripts/palmer.py') >> + >> + # Move back to the base relax directory. >> + chdir(sys.path[-1]) >> >> Modified: 1.3/test_suite/system_tests/scripts/palmer.py >> URL: >> http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/scripts/palmer.py?rev=7040&r1=7039&r2=7040&view=diff >> ============================================================================== >> --- 1.3/test_suite/system_tests/scripts/palmer.py (original) >> +++ 1.3/test_suite/system_tests/scripts/palmer.py Wed Jul 30 22:37:09 2008 >> @@ -1,7 +1,6 @@ >> # Script for model-free analysis using the program 'Modelfree4'. >> >> # Python module imports. >> -from os import chdir >> import sys >> >> >> @@ -121,9 +120,6 @@ >> # Set the run name (also the name of a preset model-free model). >> runs = ['m1', 'm2', 'm3'] >> >> -# Move to the temporary directory. >> -chdir(sys.path[-1] + '/test_suite/system_tests/data/temp_palmer') >> - >> # Run the stages. >> exec_stage_1(runs) >> exec_stage_2(runs) >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-commits mailing list >> [EMAIL PROTECTED] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-commits >> >> > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
