URL:
<http://gna.org/bugs/?12410>
Summary: Problem with the final stage of full_analysis.py:
Monte Carlo simulations and missing sequence.
Project: relax
Submitted by: bugman
Submitted on: Sunday 10/05/2008 at 13:03
Category: relax's source code
Severity: 4 - Important
Priority: 7 - High
Status: None
Privacy: Public
Assigned to: bugman
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: 1.3.1
Operating System: All systems
_______________________________________________________
Details:
The last stage of full_analysis.py now gives this error message:
relax> pipe.create(pipe_name='local_tm', pipe_type='mf')
relax> results.read(file='results', dir='local_tm/aic')
Opening the file 'local_tm/aic/results.bz2' for reading.
relax> pipe.create(pipe_name='sphere', pipe_type='mf')
relax> results.read(file='results', dir='sphere/round_11/opt')
Opening the file 'sphere/round_11/opt/results.bz2' for reading.
relax> pipe.create(pipe_name='prolate', pipe_type='mf')
relax> results.read(file='results', dir='prolate/round_6/opt')
Opening the file 'prolate/round_6/opt/results.bz2' for reading.
relax> pipe.create(pipe_name='oblate', pipe_type='mf')
relax> results.read(file='results', dir='oblate/round_13/opt')
Opening the file 'oblate/round_13/opt/results.bz2' for reading.
relax> pipe.create(pipe_name='ellipsoid', pipe_type='mf')
relax> results.read(file='results', dir='ellipsoid/round_8/opt')
Opening the file 'ellipsoid/round_8/opt/results.bz2' for reading.
relax> model_selection(method='AIC', modsel_pipe='final', pipes=['local_tm',
'sphere', 'prolate', 'oblate', 'ellipsoid'])
AIC model selection.
Model index 0.
Data pipe Num_params_(k) Num_data_sets_(n) Chi2
Criterion
local_tm 378 810 195.07318
951.07318
sphere 305 810 269.72229
879.72229
prolate 294 810 252.81878
840.81878
oblate 303 810 258.90266
864.90266
ellipsoid 297 810 247.04794
841.04794
The model from the data pipe 'prolate' has been selected.
relax> fix(element='diff', fixed=True)
relax> monte_carlo.setup(number=200)
RelaxError: The sequence data does not exist.
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?12410>
_______________________________________________
Message sent via/by Gna!
http://gna.org/
_______________________________________________
relax (http://nmr-relax.com)
This is the relax-devel mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel
