URL:
<http://gna.org/bugs/?12607>
Summary: RelaxError: Grid search size too large
Project: relax
Submitted by: None
Submitted on: Tuesday 11/18/2008 at 00:28 CET
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name: Chris Brosey
Originator Email: [EMAIL PROTECTED]
Open/Closed: Open
Discussion Lock: Any
Release: Repository: 1.3 line
Operating System: GNU/Linux
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Details:
Greetings,
In running the full_analysis.py script for the ‘sphere’ model, I have
encountered an error during optimization of the diffusion tensor, primarily
that the size of the grid search is too large (see attached traceback and
output logs). I am using experimental input data of my own (~246 residues)
that has been formatted to match the test files that I have used previously.
The only alteration to the script after a successful ‘local_tm’ run was to
specify ‘sphere’ as the diffusion model. This error does not occur when I
run the test files from /test_suite/shared_data/model_free/S2…0.149, so I am
not sure what is going on. The reference pdb I am using is the output of the
Palmer r2r1_diffusion script.
I am attaching two files: (1) Traceback.log with output from the --debug
option and (2) relax_sphere.log with general output from the run. Many
thanks!
_______________________________________________________
File Attachments:
-------------------------------------------------------
Date: Tuesday 11/18/2008 at 00:28 CET Name: Traceback.log Size: 2kB By:
None
<http://gna.org/bugs/download.php?file_id=5018>
-------------------------------------------------------
Date: Tuesday 11/18/2008 at 00:28 CET Name: relax_sphere.log Size: 36kB
By: None
<http://gna.org/bugs/download.php?file_id=5019>
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?12607>
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