Hi, This problem indeed comes from another part of the code. The problem is that the object is missing. I would guess the problem is in the model_select() method. Tracing back, I'd check data_init() and then data_names(). So my guess is that there is no 'r2a' data structure name returned by this last method.
Regards, Edward On Sun, Jan 11, 2009 at 10:15 PM, Sébastien Morin <[email protected]> wrote: > Hi Ed, > > I was pretty sure this was already fine before the commit, but the error > message below (from the system-test for the slow-exchange regime, the > same being tru for the test for the fast-exchange regime) made me feel > it might need to be changed... > > ================================= > relax> grid_search(lower=None, upper=None, inc=11, constraints=True, > verbosity=1) > Traceback (most recent call last): > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/test_suite/system_tests/relax_disp.py", > line 75, in test_curve_fitting_cpmg_slow > self.relax.interpreter.run(script_file=sys.path[-1] + > '/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py') > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/prompt/interpreter.py", > line 276, in run > return run_script(intro=self.__intro_string, local=self.local, > script_file=script_file, quit=self.__quit_flag, > show_script=self.__show_script, raise_relax_error=self.__raise_relax_error) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/prompt/interpreter.py", > line 537, in run_script > return console.interact(intro, local, script_file, quit, > show_script=show_script, raise_relax_error=raise_relax_error) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/prompt/interpreter.py", > line 433, in interact_script > execfile(script_file, local) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/test_suite/system_tests/scripts/relax_disp_cpmg_slow.py", > line 96, in <module> > grid_search(inc=11) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/prompt/minimisation.py", > line 156, in grid_search > minimise.grid_search(lower=lower, upper=upper, inc=inc, > constraints=constraints, verbosity=verbosity) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/generic_fns/minimise.py", > line 185, in grid_search > grid_search(lower=lower, upper=upper, inc=inc, > constraints=constraints, verbosity=verbosity) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/specific_fns/relax_disp.py", > line 578, in grid_search > self.minimise(min_algor='grid', lower=lower, upper=upper, inc=inc, > constraints=constraints, verbosity=verbosity, sim_index=sim_index) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/specific_fns/relax_disp.py", > line 817, in minimise > param_vector = self.assemble_param_vector(spin=spin) > File > "/home/semor/pse-4/collaborations/relax/relax-1.3--relax_disp/specific_fns/relax_disp.py", > line 95, in assemble_param_vector > elif spin.r2a == None: > AttributeError: 'SpinContainer' object has no attribute 'r2a' > ================================= > > What do you think ? Does this error arise because of an error in case > somewhere else in the code ? > > Regards, > > > Séb :) > > > > > Edward d'Auvergne wrote: >> Hi, >> >> It looks like there might still be a few capitalisation issues. >> Please see below. >> >> >> On Sun, Jan 11, 2009 at 9:29 PM, <[email protected]> wrote: >> >>> Author: semor >>> Date: Sun Jan 11 21:29:53 2009 >>> New Revision: 8396 >>> >>> URL: http://svn.gna.org/viewcvs/relax?rev=8396&view=rev >>> Log: >>> Changed the object names so they are lower case as they should be, based on >>> the rest of the code. >>> >>> Made the equivalent change in the function assemble_param_vector() to allow >>> the system-test to go >>> further.. >>> >>> This was spotted by Ed in a post at: >>> https://mail.gna.org/public/relax-devel/2009-01/msg00058.html >>> (Message-id: <[email protected]>) >>> >>> >>> Modified: >>> branches/relax_disp/specific_fns/relax_disp.py >>> >>> Modified: branches/relax_disp/specific_fns/relax_disp.py >>> URL: >>> http://svn.gna.org/viewcvs/relax/branches/relax_disp/specific_fns/relax_disp.py?rev=8396&r1=8395&r2=8396&view=diff >>> ============================================================================== >>> --- branches/relax_disp/specific_fns/relax_disp.py (original) >>> +++ branches/relax_disp/specific_fns/relax_disp.py Sun Jan 11 21:29:53 2009 >>> @@ -62,7 +62,7 @@ >>> # Loop over the model parameters. >>> for i in xrange(len(spin.params)): >>> # Transversal relaxation rate. >>> - if spin.params[i] == 'R2': >>> + if spin.params[i] == 'r2': >>> >> >> Here this is the parameter string, which is what the user sees. In >> this situation, it should be in natural case, eg 'R2'. This is the >> same with everything in spin.params. >> >> >> >>> if sim_index != None: >>> param_vector.append(spin.r2_sim[sim_index]) >>> elif spin.r2 == None: >>> @@ -71,7 +71,7 @@ >>> param_vector.append(spin.r2) >>> >>> # Chemical exchange contribution to 'R2'. >>> - elif spin.params[i] == 'Rex': >>> + elif spin.params[i] == 'rex': >>> if sim_index != None: >>> param_vector.append(spin.rex_sim[sim_index]) >>> elif spin.rex == None: >>> @@ -89,7 +89,7 @@ >>> param_vector.append(spin.kex) >>> >>> # Transversal relaxation rate for state A. >>> - if spin.params[i] == 'R2A': >>> + if spin.params[i] == 'r2a': >>> if sim_index != None: >>> param_vector.append(spin.r2a_sim[sim_index]) >>> elif spin.r2a == None: >>> @@ -98,7 +98,7 @@ >>> param_vector.append(spin.r2a) >>> >>> # Exchange rate from state A to state B. >>> - if spin.params[i] == 'kA': >>> + if spin.params[i] == 'ka': >>> if sim_index != None: >>> param_vector.append(spin.ka_sim[sim_index]) >>> elif spin.ka == None: >>> @@ -1032,15 +1032,15 @@ >>> | Data type | Object name >>> | Patterns | >>> >>> |___________________________________________________|________________|__________________________| >>> | | >>> | | >>> - | Transversal relaxation rate | 'R2' >>> | '^[Rr]2$' | >>> + | Transversal relaxation rate | 'r2' >>> | '^[Rr]2$' | >>> >> >> Here this is the object name, not the parameter name. So it should be >> 'r2', which is now correct. >> >> Regards, >> >> Edward >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-devel mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-devel >> >> > > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
