Hi Michael, To use the functional code, you may need to jump back a few revisions. In your local copy, just type:
$ svn up -r10525 This will get you to a stable spot, before I broke everything spinning the Rx code out of relax_gui. You'll also see with this last commit the full resolution relax logo, which may come in handy later on. Regards, Edward On 28 January 2010 16:37, Edward d'Auvergne <[email protected]> wrote: > Hi Michael, > > After all the huge infrastructural changes in tightly integrating the > GUI into relax (most of which are not visible), I finally have the > automatic model-free protocol running! As this been a massive set of > changes, I'll recap these as a summary: > > * Splitting of 'relax_gui' into many modules. > * A clean system for image and icon usage in the program with the > 'path' module (and the addition of the oxygen icons). > * Shifted the building of the main GUI elements (main window, menu > bar, automatic model-free analysis frame) into self.build_* > * Spun out all of the automatic model-free code into its own module. > * GUI package file layout improvements. > * Alphabetical ordering of all functions, methods, and classes. > * Whitespace rule violations have been fixed. > * Class and function naming rule violations have been fixed. > * Shifted to using a single code base across relax (GUI and > full_analysis.py) for the automatic model-free protocol by using the > new automatic_analysis.dauvergne_protocol module. > * Conversion of module, class, function, and method comments into docstrings. > * Isolated many GUI elements into their own methods (aggregating > creation, property setting, layout, and event binding all in one > place). This allows for most variables to be local and hidden from > the rest of the GUI, and for easy large scale GUI rearrangements. > * Elimination of most global variables. All have to go! > * Creation of the ds.relax_gui object for storing all GUI information > within the relax data store. > * Creation of the ds.relax_gui.analyses list object for storing all > automatic analysis specific data. > * The relaxGUI save file has been replaced by the relax save state - > all data is now in the relax data store. > * A set of sync_ds() methods have been added to the main class and the > analysis classes to synchronise the data between the GUI and relax > data store. > * Added epydoc documentation to the docstrings. > * The file dialogs change the current working directory (cwd) using > chdir, so that the next dialog will open in the same place (not > complete). > * Object (variable, function, class, etc.) renaming to better reflect > what they do. > * self is never passed into functions. > * The self.analysis_frames list has been added to the main class to > allow dynamic creation and deletion of these GUI elements (as well as > easy access to the data and methods of the class). > * Variable name simplification and shifting into the local method name > space of that GUI element. > * Made the controller window fully independent (can be opened and > closed at any time, and the GUI does not freeze during execution). > > > I hope you were able to keep up ;) The rest of the code base must > follow these concepts. The following still needs to be done: > > * Repair all code where FIXME is written. > * Spin out the R1, R2, and NOE code (I will work on this to give you > the infrastructure to advance the code). > * Eliminate the choice between AIC and BIC in the automatic model-free > protocol - BIC can never be used for this specific protocol. > * Variable name simplifications. > * Further isolation of each GUI element into methods or classes (and > the elimination of all __set_properties() and __do_layout() methods). > * Controller window improvements (too much memory used by the STDOUT > messages, thread issues, IO redirection issues, etc.). > > > I'll try to spin out the R1, R2, and NOE code from relax_gui. I'll > leave all other code unmodified so that you can start to dig into it. > > Regards, > > Edward > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
