The problem is that the auto analysis relax_fit code is going through the prompt package. This can be changed to directly call the generic_fns code which should accept a file object.
Regards, Edward On 13 April 2010 00:28, Michael Bieri <[email protected]> wrote: > There is a problem with the dummy file as the function reading the file > requires a string: > > Traceback (most recent call last): > File "gui_bieri/analyses/auto_rx_base.py", line 402, in execute_thread > File "auto_analyses/relax_fit.py", line 87, in __init__ > File "auto_analyses/relax_fit.py", line 124, in run > File "prompt/deselect.py", line 146, in read > File "arg_check.py", line 495, in is_str > raise RelaxStrError(name, arg) > relax_errors.RelaxStrError: RelaxError: The file name argument > '<relax_io.DummyFileObject instance at 0x9ea1f8c>' must be a string. > > > Can this get solved by changing arg_check.py or do I have to call the > relax_io.DummyFileObject differently? > > > > > Edward d'Auvergne wrote: >> This should be a nice short term fix. This can be redesigned in the >> future to use more of the functionality already present in relax, i.e. >> all the select and deselect user fns. >> >> Cheers, >> >> Edward >> >> >> >> >> On 12 April 2010 04:37, <[email protected]> wrote: >> >>> Author: michaelbieri >>> Date: Mon Apr 12 04:37:43 2010 >>> New Revision: 11062 >>> >>> URL: http://svn.gna.org/viewcvs/relax?rev=11062&view=rev >>> Log: >>> relaxGUI creates a dummy file for unresolved spins that will be used in >>> relax_fit.py >>> >>> Modified: >>> branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py >>> >>> Modified: branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py >>> URL: >>> http://svn.gna.org/viewcvs/relax/branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py?rev=11062&r1=11061&r2=11062&view=diff >>> ============================================================================== >>> --- branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py (original) >>> +++ branches/bieri_gui/gui_bieri/analyses/auto_rx_base.py Mon Apr 12 >>> 04:37:43 2010 >>> @@ -26,6 +26,7 @@ >>> >>> # Python module imports. >>> from os import sep >>> +from string import replace >>> import sys >>> import thread >>> import time >>> @@ -34,6 +35,7 @@ >>> # relax module imports. >>> from auto_analyses.relax_fit import Relax_fit >>> from data import Relax_data_store; ds = Relax_data_store() >>> +from relax_io import DummyFileObject >>> >>> # relaxGUI module imports. >>> from gui_bieri.analyses.project import open_file >>> @@ -265,7 +267,12 @@ >>> data.mc_num = 500 >>> >>> # Unresolved resiudes >>> - data.unresolved = self.data.unresolved >>> + file = DummyFileObject >>> + entries = self.data.unresolved >>> + entries = replace(entries, ',', '\n') >>> + file.write(entries) >>> + file.close() >>> + data.unresolved = file >>> >>> # Structure File >>> data.structure_file = self.data.structure_file >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-commits mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-commits >>> >>> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-devel mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-devel >> >> >> > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
