The next step is a bit harder. I'll let you see if you can work out
where to go using the system test error message:
======================================================================
ERROR: Load the 'Indol_test.xyz' XYZ file (using the internal
structural object XYZ reader).
----------------------------------------------------------------------
relax> pipe.create(pipe_name='mf', pipe_type='mf')
relax> structure.read_xyz(file='Indol_test.xyz',
dir='/data/relax/branches/xyz/test_suite/shared_data/structures',
read_mol=None, set_mol_name=None, read_model=None, set_model_num=None)
Traceback (most recent call last):
File "test_suite/system_tests/structure.py", line 636, in
test_read_xyz_internal1
self.interpreter.structure.read_xyz(file='Indol_test.xyz', dir=path)
File "prompt/structure.py", line 571, in read_xyz
generic_fns.structure.main.read_xyz(file=file, dir=dir,
read_mol=read_mol, set_mol_name=set_mol_name, read_model=read_model,
set_model_num=set_model_num)
File "generic_fns/structure/main.py", line 426, in read_xyz
cdp.structure.load_xyz(file_path, read_mol=read_mol,
set_mol_name=set_mol_name, read_model=read_model,
set_model_num=set_model_num, verbosity=verbosity)
AttributeError: Internal instance has no attribute 'load_xyz'
----------------------------------------------------------------------
Regards,
Edward
On 10 June 2011 15:12, Edward d'Auvergne <[email protected]> wrote:
> Hi,
>
> I just committed the patch. The code was very clean and exactly the
> right lines were deleted. The only problem is line 419 and 420. For
> the clean relax coding style, there should not be two empty lines, or
> any trailing whitespace (there are exceptions but they are rare and
> have good reasons). Oh, it is also sometimes useful to point to
> mailing list messages at https://mail.gna.org/public/relax-devel/ when
> following the advice from a mail.
>
> Cheers,
>
> Edward
>
>
>
> On 10 June 2011 15:04, Han Sun <[email protected]> wrote:
>>
>> Follow-up Comment #6, task #7404 (project relax):
>>
>> Generating new user function 'read_xyz()'.
>>
>> This is Han's patch https://gna.org/task/download.php?file_id=13153 attached
>> to the task
>> http://gna.org/task/?7404.
>>
>> The user function 'read_xyz()' was generated and modified in the
>> generic_fns/structure/main.py based on the function 'read_pdb()'.
>>
>>
>> _______________________________________________________
>>
>> Reply to this item at:
>>
>> <http://gna.org/task/?7404>
>>
>> _______________________________________________
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>> http://gna.org/
>>
>>
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>>
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>
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