Hi,
When I run the GUI, the R1 test fails on my system. So there must be
differences between Mac OS X versions. The message is quite strange,
and a window appears with the title 'wxPython: stdout/sterr', and then
at the end I get a "Bus error" after the tests finish. Then after a
while a new window appears saying that python quit unexpectedly. This
is probably a GUI difference between GNU/Linux and Mac OS X which will
need to be solved :S This is the output:
----------------------
#############
# GUI tests #
#############
.E.
======================================================================
ERROR: Test the r1 analysis.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/edward/relax/branches/gui_testing/test_suite/gui_tests/rx.py",
line 108, in test_r1_analysis
analysis.field_nmr_frq.SetValue(str_to_gui('600'))
AttributeError: 'NoneType' object has no attribute 'field_nmr_frq'
----------------------------------------------------------------------
Ran 3 tests in 170.973s
FAILED (errors=1)
###################################
# Summary of the relax test suite #
###################################
# Optional packages/modules
###########################
No tests skipped due to missing modules.
# Synopsis
##########
GUI tests ....................................................... [ Failed ]
Bus error
----------------------
As for the error you see with the new analysis, that is quite strange.
I see something completely different!
----------------------
Traceback (most recent call last):
File "/Users/edward/relax/branches/gui_testing/gui/analyses/__init__.py",
line 289, in menu_new
data = self.new_wizard.run()
File "/Users/edward/relax/branches/gui_testing/gui/analyses/wizard.py",
line 60, in run
setup = self.wizard.run(modal=True)
File "/Users/edward/relax/branches/gui_testing/gui/wizard.py", line
1395, in run
self.Destroy()
File
"/var/tmp/wxWidgets/wxWidgets-13~231/2.6/DSTROOT/System/Library/Frameworks/Python.framework/Versions/2.6/Extras/lib/python/wx-2.8-mac-unicode/wx/_core.py",
line 14501, in __getattr__
wx._core.PyDeadObjectError: The C++ part of the Wiz_window object has
been deleted, attribute access no longer allowed.
----------------------
After this the GUI is still responsive. Without the debug flag, it
appears as if the new analysis wizard does nothing, but looking at the
relax controller reveals this message.
I can also see that there is going to be a lot of polish required to
make this look good on a Mac. The wx error dialog is missing the
graphic, so we would need to create a custom dialog for relax with
graphic. And the height of GUI elements are different so we would
need to either fix some heights with SetSize() or to centre the
elements with wx.ALIGN_CENTRE_VERTICAL.
Regards,
Edward
P. S. I need to get a copy of Mac OS X Server (personal edition) on a
VirtualBox VM to speed up this work. My Mac access is not very good
at the moment, so it's taking hours to test this properly. Fink also
takes ages just to install some basics such as gvim :S
On 22 July 2011 15:12, Sébastien Morin <[email protected]> wrote:
> Hi Ed,
>
> The gui tests (ran from "./relax --gui-test") all pass, although with this
> additional output after the relax results:
>
> =====
> 2011-07-22 15:12:20.339 Python[42505:613] *** attempt to pop an unknown
> autorelease pool (0x10334ca00)
> =====
>
> Thanks for reminding me of the "-d" option. However, for this case, since
> the gui crashes, there is no output and the only way out is to type "ctrl c"
> on the command line, thus killing the gui and its potential output... The
> only way I can get and output is when kill relax through the command "kill".
> Then, Mac OSX pops-up an error window with the text below.
>
> All the best,
>
>
> Séb :)
>
>
> ========
> Process: Python [10541]
> Path:
> /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
> Identifier: org.python.python
> Version: 2.7.1 (2.7.1)
> Code Type: X86-64 (Native)
> Parent Process: bash [1542]
>
> Date/Time: 2011-07-22 15:09:43.480 +0200
> OS Version: Mac OS X 10.6.8 (10K540)
> Report Version: 6
>
> Interval Since Last Report: 263893 sec
> Crashes Since Last Report: 1
> Per-App Interval Since Last Report: 312 sec
> Per-App Crashes Since Last Report: 1
> Anonymous UUID: 6A9BB47A-F272-4B1A-AF3B-9AB7845EF229
>
> Exception Type: EXC_CRASH (SIGQUIT)
> Exception Codes: 0x0000000000000000, 0x0000000000000000
> Crashed Thread: 0 Dispatch queue: com.apple.main-thread
>
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>
> Thread 1: Dispatch queue: com.apple.libdispatch-manager
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>
> Thread 0 crashed with X86 Thread State (64-bit):
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> 0x7fff883a0000 - 0x7fff88461fff libFontParser.dylib ??? (???)
> <A00BB0A7-E46C-1D07-1391-194745566C7E>
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> 0x7fff88688000 - 0x7fff88689fff liblangid.dylib ??? (???)
> <EA4D1607-2BD5-2EE2-2A3B-632EEE5A444D> /usr/lib/liblangid.dylib
> 0x7fff88694000 - 0x7fff88768fe7 com.apple.CFNetwork 454.12.4
> (454.12.4) <C83E2BA1-1818-B3E8-5334-860AD21D1C80>
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
> 0x7fff88950000 - 0x7fff8898dff7 libssl.0.9.8.dylib 0.9.8
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> 0x7fff8898e000 - 0x7fff889eefe7 com.apple.framework.IOKit 2.0 (???)
> <4F071EF0-8260-01E9-C641-830E582FA416>
> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
> 0x7fff889ef000 - 0x7fff88a10fff libresolv.9.dylib 41.0.0
> (compatibility 1.0.0) <6993F348-428F-C97E-7A84-7BD2EDC46A62>
> /usr/lib/libresolv.9.dylib
> 0x7fff88a11000 - 0x7fff88a5afef libGLU.dylib ??? (???)
> <1C050088-4AB2-2BC2-62E6-C969F925A945>
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
> 0x7fff88a5b000 - 0x7fff88aebfff com.apple.SearchKit 1.3.0 (1.3.0)
> <4175DC31-1506-228A-08FD-C704AC9DF642>
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
> 0x7fff88aec000 - 0x7fff88f2ffef libLAPACK.dylib 219.0.0
> (compatibility 1.0.0) <0CC61C98-FF51-67B3-F3D8-C5E430C201A9>
> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
> 0x7fff89035000 - 0x7fff89035ff7 com.apple.CoreServices 44 (44)
> <DC7400FB-851E-7B8A-5BF6-6F50094302FB>
> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
> 0x7fff89036000 - 0x7fff89077fff com.apple.SystemConfiguration 1.10.8
> (1.10.2) <78D48D27-A9C4-62CA-2803-D0BBED82855A>
> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
> 0x7fff89078000 - 0x7fff8912dfe7 com.apple.ink.framework 1.3.3 (107)
> <FFC46EE0-3544-A459-2AB9-94778A75E3D4>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
> 0x7fff8912e000 - 0x7fff892ecff7 com.apple.ImageIO.framework 3.0.4
> (3.0.4) <6212CA66-7B18-2AED-6AA8-45185F5D9A03>
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
> 0x7fff893c8000 - 0x7fff8953ffe7 com.apple.CoreFoundation 6.6.5
> (550.43) <31A1C118-AD96-0A11-8BDF-BD55B9940EDC>
> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
> 0x7fff89686000 - 0x7fff896d0ff7 com.apple.Metadata 10.6.3 (507.15)
> <2EF19055-D7AE-4D77-E589-7B71B0BC1E59>
> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
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> 0x7fff89715000 - 0x7fff89718ff7 com.apple.securityhi 4.0 (36638)
> <38935851-09E4-DDAB-DB1D-30ADC39F7ED0>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
> 0x7fff89719000 - 0x7fff89838fe7 libcrypto.0.9.8.dylib 0.9.8
> (compatibility 0.9.8) <14115D29-432B-CF02-6B24-A60CC533A09E>
> /usr/lib/libcrypto.0.9.8.dylib
> 0x7fff89aa3000 - 0x7fff89be1fff com.apple.CoreData 102.1 (251)
> <32233D4D-00B7-CE14-C881-6BF19FD05A03>
> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
> 0x7fff89be2000 - 0x7fff89bfdff7 com.apple.openscripting 1.3.1 (???)
> <FD46A0FE-AC79-3EF7-AB4F-396D376DDE71>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
> 0x7fff89c46000 - 0x7fff89c77fff libGLImage.dylib ??? (???)
> <7F102A07-E4FB-9F52-B2F6-4E2D2383CA13>
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
> 0x7fff89c78000 - 0x7fff89c7eff7 IOSurface ??? (???)
> <04EDCEDE-E36F-15F8-DC67-E61E149D2C9A>
> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
> 0x7fff89c7f000 - 0x7fff89f01fe7 com.apple.Foundation 6.6.7 (751.62)
> <6F2A5BBF-6990-D561-2928-AD61E94036D9>
> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
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> 0x7fff89f28000 - 0x7fff89f2dff7 com.apple.CommonPanels 1.2.4 (91)
> <4D84803B-BD06-D80E-15AE-EFBE43F93605>
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> (compatibility 64.0.0) <DB710299-B4D9-3714-66F7-5D2964DE585B>
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> 0x7fff89f48000 - 0x7fff89fc5fef libstdc++.6.dylib 7.9.0
> (compatibility 7.0.0) <35ECA411-2C08-FD7D-11B1-1B7A04921A5C>
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> <05AEA122-3F31-0F56-4AA6-E84140C53785>
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> 0x7fff8a364000 - 0x7fff8a366fff com.apple.print.framework.Print 6.1
> (237.1) <CA8564FB-B366-7413-B12E-9892DA3C6157>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
> 0x7fff8a3ea000 - 0x7fff8a407ff7 libPng.dylib ??? (???)
> <4815A8F2-24A0-E783-8A5A-7B4959F562D7>
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
> 0x7fff8a408000 - 0x7fff8a41cfff libGL.dylib ??? (???)
> <2ECE3B0F-39E1-3938-BF27-7205C6D0358B>
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
> 0x7fff8a41d000 - 0x7fff8a429fff libbz2.1.0.dylib 1.0.5
> (compatibility 1.0.0) <6FB0A8F4-72A1-D28F-E801-DE2C7498AFB9>
> /usr/lib/libbz2.1.0.dylib
> 0x7fff8a594000 - 0x7fff8a613fe7 com.apple.audio.CoreAudio 3.2.6
> (3.2.6) <79E256EB-43F1-C7AA-6436-124A4FFB02D0>
> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
> 0x7fff8a614000 - 0x7fff8a634ff7 com.apple.DirectoryService.Framework
> 3.6 (621.11) <AD76C757-6701-BDB5-631E-1CB77D669586>
> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService
> 0x7fffffe00000 - 0x7fffffe01fff libSystem.B.dylib ??? (???)
> <9AB4F1D1-89DC-0E8A-DC8E-A4FE4D69DB69> /usr/lib/libSystem.B.dylib
>
> Model: MacBookPro5,3, BootROM MBP53.00AC.B03, 2 processors, Intel Core 2
> Duo, 2.8 GHz, 4 GB, SMC 1.48f2
> Graphics: NVIDIA GeForce 9600M GT, NVIDIA GeForce 9600M GT, PCIe, 512 MB
> Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
> Memory Module: global_name
> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8D),
> Broadcom BCM43xx 1.0 (5.10.131.42.4)
> Bluetooth: Version 2.4.5f3, 2 service, 12 devices, 1 incoming serial ports
> Network Service: Ethernet, Ethernet, en0
> Network Service: AirPort, AirPort, en1
> Serial ATA Device: FUJITSU MJA2500BH FFS G1, 465.76 GB
> Serial ATA Device: MATSHITADVD-R UJ-868
> USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8507, 0x24400000 / 2
> USB Device: Internal Memory Card Reader, 0x05ac (Apple Inc.), 0x8403,
> 0x26500000 / 2
> USB Device: Apple Internal Keyboard / Trackpad, 0x05ac (Apple Inc.),
> 0x0236, 0x04600000 / 3
> USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0x04500000 / 2
> USB Device: Optical USB Mouse, 0x046d (Logitech Inc.), 0xc016, 0x06200000 /
> 3
> USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x06100000 / 2
> USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8217,
> 0x06110000 / 4
> ========
>
>
>
>
> On 11-07-22 3:03 PM, Edward d'Auvergne wrote:
>>
>> Hi Seb,
>>
>> I now have a Mac OS X machine I can test this out out. This type of
>> bug could actually be any GUI error, so greyed out menus or a
>> unresponsive GUI doesn't say much. When testing the GUI, it is best
>> to run relax using:
>>
>> $ ./relax -gd
>>
>> This will then leave STDOUT and STDERR output to the terminal from
>> where relax was launched, rather than sending the output to the relax
>> controller. Note I have also implemented the framework for GUI tests
>> and already have 3 tests which pass on my GNU/Linux machine. To use
>> this, type:
>>
>> $ ./relax --gui-test
>>
>> These tests are run as part of the full test suite as well, so:
>>
>> $ ./relax -x
>>
>> will test everything. I haven't looked at polishing or even debugging
>> the GUI on Mac OS X or MS Windows yet, as I'm still in the fundamental
>> redesign process. It is getting close though, and the new GUI design
>> is quite different. It should give the flexibility that users
>> require. And it should make it easy to add new analyses to the GUI
>> such as the consistency testing, the reduced spectral density mapping,
>> the N-state model, and the frame order theory (as well as a custom
>> analysis where the user is free to do what ever they like. It is also
>> quite easy to create user functions windows with the infrastructure
>> now built into this branch.
>>
>> Regards,
>>
>> Edward
>>
>>
>> P. S. If you work out how to fix something on a Mac yourself, that
>> information would be quite useful ;)
>>
>>
>>
>> On 22 July 2011 13:39, Sébastien Morin<[email protected]> wrote:
>>>
>>> Hi Edward,
>>>
>>> I just updated my copy of the gui-testing branch and tried it under Mac
>>> OSX.
>>>
>>> If choosing "File / New analysis" and going through the process, after
>>> pressing "Finish", all menu times are gray and relax is unresponsive, as
>>> was
>>> observed before (see bug https://gna.org/bugs/?18197).
>>>
>>> This will prevent the use of relax under Mac OSX...
>>>
>>> Cheers,
>>>
>>>
>>> Séb :)
>>>
>>> --
>>> Sébastien Morin, Ph.D.
>>> Postdoctoral Fellow, S. Grzesiek NMR Laboratory
>>> Department of Structural Biology
>>> Biozentrum, Universität Basel
>>> Klingelbergstrasse 70
>>> 4056 Basel
>>> Switzerland
>>>
>>>
>>> _______________________________________________
>>> relax (http://nmr-relax.com)
>>>
>>> This is the relax-devel mailing list
>>> [email protected]
>>>
>>> To unsubscribe from this list, get a password
>>> reminder, or change your subscription options,
>>> visit the list information page at
>>> https://mail.gna.org/listinfo/relax-devel
>>>
>> _______________________________________________
>> relax (http://nmr-relax.com)
>>
>> This is the relax-devel mailing list
>> [email protected]
>>
>> To unsubscribe from this list, get a password
>> reminder, or change your subscription options,
>> visit the list information page at
>> https://mail.gna.org/listinfo/relax-devel
>
> --
> Sébastien Morin, Ph.D.
> Postdoctoral Fellow, S. Grzesiek NMR Laboratory
> Department of Structural Biology
> Biozentrum, Universität Basel
> Klingelbergstrasse 70
> 4056 Basel
> Switzerland
>
>
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