Hi, That is exactly the same problem. Feel free to add a fix to the second system test - I only made the change for one of them.
Regards, Edward On 11 August 2011 17:42, Sébastien Morin <[email protected]> wrote: > Hi Ed, > > What a coincidence !!! > > This morning, I tested the installation of relax 1.3.10 on Linux Fedora and > I had problem with two tests (namely > "test_opt_constr_bfgs_back_S2_0_970_te_2048_Rex_0_149" and > "test_opt_constr_bfgs_mt_S2_0_970_te_2048_Rex_0_149 > (test_suite.system_tests.model_free.Mf)"), probably because of the same > issue fixed in the current revision... > > Below is the output of "relax -s". Could you check if the problem is the > same and, if needed, fix it as you did for MS Windows..? > > Thanks ! > > > Séb :) > > ============== > [jurgen@pake relax-1.3.10]$ ./relax -s > Echoing of user function calls has been enabled. > > > > > ############################# > # System / functional tests # > ############################# > > > ...............................................................................................FF............................................................................................................. > ====================================================================== > FAIL: test_opt_constr_bfgs_back_S2_0_970_te_2048_Rex_0_149 > (test_suite.system_tests.model_free.Mf) > Constrained BFGS opt, backtracking line search {S2=0.970, te=2048, > Rex=0.149} > ---------------------------------------------------------------------- > > relax> pipe.create(pipe_name='mf', pipe_type='mf') > > > > relax 1.3.10 > > Molecular dynamics by NMR data analysis > > Copyright (C) 2001-2006 Edward d'Auvergne > Copyright (C) 2006-2011 the relax development team > > This is free software which you are welcome to modify and redistribute under > the conditions of the > GNU General Public License (GPL). This program, including all modules, is > licensed under the GPL > and comes with absolutely no warranty. For details type 'GPL' within the > relax prompt. > > Assistance in using the relax prompt and scripting interface can be accessed > by typing 'help' within > the prompt. > > > relax> sequence.read(file='noe.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, sep=None, spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out' > for reading. > > > > relax> relax_data.read(ri_label='R1', frq_label='600', frq=600000000.0, > file='r1.600.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.600.out' > for reading. > > relax> relax_data.read(ri_label='R2', frq_label='600', frq=600000000.0, > file='r2.600.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.600.out' > for reading. > > relax> relax_data.read(ri_label='NOE', frq_label='600', frq=600000000.0, > file='noe.600.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.600.out' > for reading. > > relax> relax_data.read(ri_label='R1', frq_label='500', frq=500000000.0, > file='r1.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.500.out' > for reading. > > relax> relax_data.read(ri_label='R2', frq_label='500', frq=500000000.0, > file='r2.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.500.out' > for reading. > > relax> relax_data.read(ri_label='NOE', frq_label='500', frq=500000000.0, > file='noe.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out' > for reading. > > relax> diffusion_tensor.init(params=1e-08, time_scale=1.0, d_scale=1.0, > angle_units='deg', param_types=0, spheroid_type=None, fixed=True) > > relax> value.set(val=1.0200000000000001e-10, param='bond_length', > spin_id=None) > > relax> value.set(val=-0.00015999999999999999, param='csa', spin_id=None) > > relax> value.set(val='15N', param='heteronucleus', spin_id=None) > > relax> value.set(val='1H', param='proton', spin_id=None) > > relax> value.display(param='csa') > > # mol_name res_num res_name spin_num spin_name value > error > None 1 GLY None None -0.00016 > None > None 2 ALA None None -0.00016 > None > > relax> value.write(param='proton', file='devnull', dir=None, force=False) > Opening the null device file for writing. > > relax> model_free.select_model(model='m4', spin_id=None) > > relax> value.set(val=[1.0, 0.0, 0.0], param=['S2', 'te', 'Rex'], > spin_id=None) > > relax> minimise(*args=('bfgs', 'back'), func_tol=1e-25, > max_iterations=10000000, constraints=True, scaling=True, verbosity=1) > > > Over-fit spin deselection. > > RelaxWarning: The spin ':1&:GLY' has been deselected because of insufficient > relaxation data, 3 or more data points are required. > Only the model-free parameters for single spins will be used. > > > Fitting to spin ':2&:ALA' > ~~~~~~~~~~~~~~~~~~~~~~~~~ > > > Method of Multipliers > ~~~~~~~~~~~~~~~~~~~~~ > > k: 0 xk: array([ 1., 0., 0.]) > fk: 3.9844117908982288 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 1, 0, 0] fk: > 3.9844117909 > > Parameter values: [0.90905501681906287, 74.369295545631317, > 1.2231009087192337] > Function value: -1447.7789206950388 > Iterations: 37 > Function calls: 93 > Gradient calls: 38 > Hessian calls: 0 > Warning: None > > > k: 1 xk: array([ 0.90905502, 74.36929555, 1.22310091]) > fk: 48.121412825285702 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 0.90906, 74.369, 1.2231] fk: > 46.0715795854 > > Parameter values: [0.98956103824007713, 408.92212422897256, > 0.12789912795489747] > Function value: 1.5767184829472947 > Iterations: 37 > Function calls: 209 > Gradient calls: 38 > Hessian calls: 0 > Warning: None > > > k: 2 xk: array([ 9.89561038e-01, 4.08922124e+02, 1.27899128e-01]) > fk: 3.6265517227850839 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 0.98956, 408.92, 0.1279] fk: > 3.62655172279 > > Parameter values: [0.98280664757781688, 601.68994600419194, > 0.055870730706586783] > Function value: 2.7803077415960757 > Iterations: 30 > Function calls: 149 > Gradient calls: 31 > Hessian calls: 0 > Warning: None > > > k: 3 xk: array([ 9.82806648e-01, 6.01689946e+02, 5.58707307e-02]) > fk: 2.7803077415960757 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 0.98281, 601.69, 0.055871] fk: > 2.7803077416 > > Parameter values: [0.97000000000262465, 2047.9999999849369, > 0.14899999993840687] > Function value: 4.3399069883879782e-20 > Iterations: 70 > Function calls: 212 > Gradient calls: 71 > Hessian calls: 0 > Warning: None > > > k: 4 xk: array([ 9.70000000e-01, 2.04800000e+03, 1.49000000e-01]) > fk: 4.3399069883879782e-20 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 0.97, 2048, 0.149] fk: > 4.33990698839e-20 > > Parameter values: [0.96999999999990616, 2047.9999999849369, > 0.14900000000189087] > Function value: 8.4298981584870517e-23 > Iterations: 11 > Function calls: 36 > Gradient calls: 12 > Hessian calls: 0 > Warning: None > > > k: 5 xk: array([ 9.70000000e-01, 2.04800000e+03, 1.49000000e-01]) > fk: 8.4298981584870517e-23 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 0.97, 2048, 0.149] fk: > 8.42989815849e-23 > > Parameter values: [0.96999999999991904, 2047.9999999849369, > 0.14900000000155103] > Function value: 8.2908269286295164e-23 > Iterations: 6 > Function calls: 41 > Gradient calls: 7 > Hessian calls: 0 > Warning: None > > > k: 6 xk: array([ 9.70000000e-01, 2.04800000e+03, 1.49000000e-01]) > fk: 8.2908269286295164e-23 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: Backtracking line search. > > k: 0 xk: [ 0.97, 2048, 0.149] fk: > 8.29082692863e-23 > > Parameter values: [0.96999999999991871, 2047.9999999849369, > 0.149000000001551] > Function value: 8.290677155630973e-23 > Iterations: 3 > Function calls: 40 > Gradient calls: 4 > Hessian calls: 0 > Warning: None > > > Parameter values: [0.96999999999991871, 2047.9999999849369, > 0.149000000001551] > Function value: 8.290677155630973e-23 > Iterations: 194 > Function calls: 780 > Gradient calls: 201 > Hessian calls: 0 > Warning: None > > Traceback (most recent call last): > File "/s/relax-1.3.10/test_suite/system_tests/model_free.py", line 826, in > test_opt_constr_bfgs_back_S2_0_970_te_2048_Rex_0_149 > self.value_test(spin, select=select, s2=s2, te=te, rex=rex, chi2=chi2, > iter=iter, f_count=f_count, g_count=g_count, h_count=h_count, > warning=warning) > File "/s/relax-1.3.10/test_suite/system_tests/model_free.py", line 2544, in > value_test > self.assert_(spin.iter in iter, msg=mesg) > AssertionError: Optimisation failure. > > System: Linux > Release: 2.6.35.13-92.fc14.i686.PAE > Version: #1 SMP Sat May 21 17:33:09 UTC 2011 > Win32 version: > Distribution: fedora 14 Laughlin > Architecture: 32bit ELF > Machine: i686 > Processor: i686 > Python version: 2.7.0 > Numpy version: 1.4.1 > Libc version: glibc 2.0 > > s2: 0.9699999999999187 > te (ps): 2047.999999985 > rex: 0.149000000001551 > chi2: 8.290677155630973e-23 > iter: 194 > f_count: 780 > g_count: 201 > h_count: 0 > warning: None > > > ====================================================================== > FAIL: test_opt_constr_bfgs_mt_S2_0_970_te_2048_Rex_0_149 > (test_suite.system_tests.model_free.Mf) > Constrained BFGS opt, More and Thuente line search {S2=0.970, te=2048, > Rex=0.149} > ---------------------------------------------------------------------- > > relax> pipe.create(pipe_name='mf', pipe_type='mf') > > > > relax 1.3.10 > > Molecular dynamics by NMR data analysis > > Copyright (C) 2001-2006 Edward d'Auvergne > Copyright (C) 2006-2011 the relax development team > > This is free software which you are welcome to modify and redistribute under > the conditions of the > GNU General Public License (GPL). This program, including all modules, is > licensed under the GPL > and comes with absolutely no warranty. For details type 'GPL' within the > relax prompt. > > Assistance in using the relax prompt and scripting interface can be accessed > by typing 'help' within > the prompt. > > > relax> sequence.read(file='noe.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, sep=None, spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out' > for reading. > > > > relax> relax_data.read(ri_label='R1', frq_label='600', frq=600000000.0, > file='r1.600.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.600.out' > for reading. > > relax> relax_data.read(ri_label='R2', frq_label='600', frq=600000000.0, > file='r2.600.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.600.out' > for reading. > > relax> relax_data.read(ri_label='NOE', frq_label='600', frq=600000000.0, > file='noe.600.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.600.out' > for reading. > > relax> relax_data.read(ri_label='R1', frq_label='500', frq=500000000.0, > file='r1.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r1.500.out' > for reading. > > relax> relax_data.read(ri_label='R2', frq_label='500', frq=500000000.0, > file='r2.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/r2.500.out' > for reading. > > relax> relax_data.read(ri_label='NOE', frq_label='500', frq=500000000.0, > file='noe.500.out', > dir='/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149', > spin_id_col=None, mol_name_col=None, res_num_col=1, res_name_col=2, > spin_num_col=None, spin_name_col=None, data_col=3, error_col=4, sep=None, > spin_id=None) > Opening the file > '/s/relax-1.3.10/test_suite/shared_data/model_free/S2_0.970_te_2048_Rex_0.149/noe.500.out' > for reading. > > relax> diffusion_tensor.init(params=1e-08, time_scale=1.0, d_scale=1.0, > angle_units='deg', param_types=0, spheroid_type=None, fixed=True) > > relax> value.set(val=1.0200000000000001e-10, param='bond_length', > spin_id=None) > > relax> value.set(val=-0.00015999999999999999, param='csa', spin_id=None) > > relax> value.set(val='15N', param='heteronucleus', spin_id=None) > > relax> value.set(val='1H', param='proton', spin_id=None) > > relax> value.display(param='csa') > > # mol_name res_num res_name spin_num spin_name value > error > None 1 GLY None None -0.00016 > None > None 2 ALA None None -0.00016 > None > > relax> value.write(param='proton', file='devnull', dir=None, force=False) > Opening the null device file for writing. > > relax> model_free.select_model(model='m4', spin_id=None) > > relax> value.set(val=[1.0, 0.0, 0.0], param=['S2', 'te', 'Rex'], > spin_id=None) > > relax> minimise(*args=('bfgs', 'mt'), func_tol=1e-25, > max_iterations=10000000, constraints=True, scaling=True, verbosity=1) > > > Over-fit spin deselection. > > RelaxWarning: The spin ':1&:GLY' has been deselected because of insufficient > relaxation data, 3 or more data points are required. > Only the model-free parameters for single spins will be used. > > > Fitting to spin ':2&:ALA' > ~~~~~~~~~~~~~~~~~~~~~~~~~ > > > Method of Multipliers > ~~~~~~~~~~~~~~~~~~~~~ > > k: 0 xk: array([ 1., 0., 0.]) > fk: 3.9844117908982288 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: More and Thuente line search. > > k: 0 xk: [ 1, 0, 0] fk: > 3.9844117909 > > Parameter values: [0.90905506221776622, 74.369430109433466, > 1.2231015622357264] > Function value: -1447.7789206948671 > Iterations: 22 > Function calls: 50 > Gradient calls: 50 > Hessian calls: 0 > Warning: None > > > k: 1 xk: array([ 0.90905506, 74.36943011, 1.22310156]) > fk: 48.121371716752286 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: More and Thuente line search. > > k: 0 xk: [ 0.90906, 74.369, 1.2231] fk: > 46.0715179226 > > Parameter values: [0.99493663077922057, 88.138505759196732, > -3.7928107668617891e-05] > Function value: 1.9644199917083982 > Iterations: 38 > Function calls: 128 > Gradient calls: 128 > Hessian calls: 0 > Warning: The gradient at point 0 of this line search is > positive, ie p is not a descent direction and the line search will not work. > (fatal minimisation error). > > > k: 2 xk: array([ 9.94936631e-01, 8.81385058e+01, -3.79281077e-05]) > fk: 144.63963445541734 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: More and Thuente line search. > > k: 0 xk: [ 0.99494, 88.139, -3.7928e-05] fk: > 4.0147053483 > > Parameter values: [0.9700000000020782, 2048.0000000119967, > 0.14899999998332922] > Function value: -7.1927067566113556e-05 > Iterations: 56 > Function calls: 129 > Gradient calls: 129 > Hessian calls: 0 > Warning: None > > > k: 3 xk: array([ 9.70000000e-01, 2.04800000e+03, 1.49000000e-01]) > fk: 1.5560391211796852e-20 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: More and Thuente line search. > > k: 0 xk: [ 0.97, 2048, 0.149] fk: > 1.55603912118e-20 > > Parameter values: [0.97000000000063413, 2048.0000000119967, > 0.14899999998330257] > Function value: 2.6082858480886141e-21 > Iterations: 1 > Function calls: 4 > Gradient calls: 4 > Hessian calls: 0 > Warning: None > > > k: 4 xk: array([ 9.70000000e-01, 2.04800000e+03, 1.49000000e-01]) > fk: 2.6082858480886141e-21 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: More and Thuente line search. > > k: 0 xk: [ 0.97, 2048, 0.149] fk: > 2.60828584809e-21 > > Parameter values: [0.97000000000006326, 2048.0000000119967, > 0.14899999999880381] > Function value: 5.1869486534269492e-23 > Iterations: 2 > Function calls: 7 > Gradient calls: 7 > Hessian calls: 0 > Warning: None > > > k: 5 xk: array([ 9.70000000e-01, 2.04800000e+03, 1.49000000e-01]) > fk: 5.1869486534269492e-23 > Entering sub-algorithm. > > Quasi-Newton BFGS minimisation > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Line search: More and Thuente line search. > > k: 0 xk: [ 0.97, 2048, 0.149] fk: > 5.18694865343e-23 > > Parameter values: [0.97000000000006315, 2048.0000000119967, > 0.14899999999880381] > Function value: 5.1821311776197656e-23 > Iterations: 3 > Function calls: 68 > Gradient calls: 68 > Hessian calls: 0 > Warning: None > > > Parameter values: [0.97000000000006315, 2048.0000000119967, > 0.14899999999880381] > Function value: 5.1821311776197656e-23 > Iterations: 122 > Function calls: 386 > Gradient calls: 386 > Hessian calls: 0 > Warning: None > > Traceback (most recent call last): > File "/s/relax-1.3.10/test_suite/system_tests/model_free.py", line 1011, in > test_opt_constr_bfgs_mt_S2_0_970_te_2048_Rex_0_149 > self.value_test(spin, select=select, s2=s2, te=te, rex=rex, chi2=chi2, > iter=iter, f_count=f_count, g_count=g_count, h_count=h_count, > warning=warning) > File "/s/relax-1.3.10/test_suite/system_tests/model_free.py", line 2544, in > value_test > self.assert_(spin.iter in iter, msg=mesg) > AssertionError: Optimisation failure. > > System: Linux > Release: 2.6.35.13-92.fc14.i686.PAE > Version: #1 SMP Sat May 21 17:33:09 UTC 2011 > Win32 version: > Distribution: fedora 14 Laughlin > Architecture: 32bit ELF > Machine: i686 > Processor: i686 > Python version: 2.7.0 > Numpy version: 1.4.1 > Libc version: glibc 2.0 > > s2: 0.9700000000000631 > te (ps): 2048.000000012 > rex: 0.14899999999880381 > chi2: 5.1821311776197656e-23 > iter: 122 > f_count: 386 > g_count: 386 > h_count: 0 > warning: None > > > ---------------------------------------------------------------------- > Ran 206 tests in 436.606s > > FAILED (failures=2) > > > > > ################################### > # Summary of the relax test suite # > ################################### > > > # Optional packages/modules > ########################### > > No tests skipped due to missing modules. > > # Synopsis > ########## > > System/functional tests ......................................... [ Failed ] > > ============== > > > On 11-08-11 4:56 PM, [email protected] wrote: >> >> Author: bugman >> Date: Thu Aug 11 16:56:16 2011 >> New Revision: 14364 >> >> URL: http://svn.gna.org/viewcvs/relax?rev=14364&view=rev >> Log: >> Fix for the test_opt_constr_bfgs_mt_S2_0_970_te_2048_Rex_0_149 model-free >> system test on MS Windows. >> >> The te parameter check was too strict. >> >> >> Modified: >> 1.3/test_suite/system_tests/model_free.py >> >> Modified: 1.3/test_suite/system_tests/model_free.py >> URL: >> http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/model_free.py?rev=14364&r1=14363&r2=14364&view=diff >> >> ============================================================================== >> --- 1.3/test_suite/system_tests/model_free.py (original) >> +++ 1.3/test_suite/system_tests/model_free.py Thu Aug 11 16:56:16 2011 >> @@ -2523,7 +2523,7 @@ >> >> # te correlation time. >> if type(te) == float: >> - self.assertAlmostEqual(spin.te / 1e-12, te, 6, msg=mesg) >> + self.assertAlmostEqual(spin.te / 1e-12, te, 5, msg=mesg) >> elif te == None: >> self.assertEqual(spin.te, None, msg=mesg) >> >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-commits mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-commits > > -- > Sébastien Morin, Ph.D. > Postdoctoral Fellow, S. Grzesiek NMR Laboratory > Department of Structural Biology > Biozentrum, Universität Basel > Klingelbergstrasse 70 > 4056 Basel > Switzerland > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
