Hi, Would you be able to create a bug report for this with a skeleton XML file which reproduces this problem? It looks like you could remove everything between the tags:
<relax time="Wed Aug 10 19:02:16 2011" version="repository checkout"> and: </relax> This looks like an XML header issue. I would like to see the XML header in this file, because all relax save files should have is: <?xml version="1.0" ?> <relax time="Wed Aug 10 19:02:16 2011" version="repository checkout"> ... </relax> The xml:lang="en_CA" looks like it has added something for Canadian English, which is quite strange. And the fact that this is line 8 of the file suggests that there is quite a complex header in this file. Has the XML file been pre-converted from one XML form to another? Regards, Edward On 16 August 2011 14:37, Sébastien Morin <[email protected]> wrote: > Hi Ed, > > Here is what my colleague Jürgen (in CC) just sent me concerning the xml > parsing problem: > > ========== > ========== >> conglomerate results > > Entity: line 8: parser error : Attribute xml:lang redefined > <description xml:lang="en_CA" xml:lang="en">This is a document type > associated > ^ > > ** (conglomerate:7470): WARNING **: Problem parsing xds file: readme.xds. > > ** Message: coverage of Conglomerate Release Notes = 0.000000 > ** Message: coverage of Apache Documentation DTD v1.2 = 0.028571 > ** Message: coverage of XHTML 1.0 (strict) = 0.000000 > ** Message: coverage of DocBook = 0.028571 > ** Message: coverage of Website Layout = 0.000000 > ** Message: coverage of TEI Lite = 0.000000 > ** Message: coverage of Webpage = 0.000000 > ** Message: coverage of "Kernel Traffic" Newsletter = 0.000000 > ** Message: coverage of Conglomerate Display Specification = 0.000000 > ** Message: coverage of Experimental "cnxml" format = 0.028571 > ** Message: coverage of RELAX NG = 0.000000 > ** Message: coverage of Experimental "opml" format = 0.000000 > ** Message: coverage of XSL stylesheet = 0.000000 > > > but it may be a special problem with 'conglomerate', now I tried > 'xmlcopyeditor' and this one didn't complain. > ========== > ========== > > I checked a bit and found a discussion of this problem on the web at: > http://lists.copyleft.no/pipermail/conglomerate-devel/2005-June/003682.html > > All the best, > > > Séb :) > > > On 11-08-15 10:39 AM, Edward d'Auvergne wrote: >> >> Hi, >> >> Would you have any information about which part he cannot parse? >> relax is using the standard python XML module 'xml' >> (http://docs.python.org/library/xml.dom.minidom.html). This should >> produce valid XML. Do you know what he's using to parse the XML? In >> any case, if he can do a little programming, all the spin data is >> reachable with something along the lines of: >> >> from generic_fns.mol_res_spin import spin_loop >> >> for spin in spin_loop(): >> print spin.s2 >> >> Regards, >> >> Edward >> >> >> >> On 15 August 2011 10:20, Sébastien Morin<[email protected]> >> wrote: >>> >>> Hi Edward, >>> >>> One colleague of mine has recently started using relax and told me he was >>> unable to read the xml output of relax using an xml reader... >>> >>> I haven't verified this myself as I am really lacking time currently, but >>> I >>> thought you might know a bit about this. ;) >>> >>> Cheers, >>> >>> >>> Séb :) >>> >>> P.S. As a compromise to using an external xml reader, I told him he could >>> start from the "final_data_extraction.py" script and modify it to fit his >>> needs... >>> >>> -- >>> Sébastien Morin, Ph.D. >>> Postdoctoral Fellow, S. Grzesiek NMR Laboratory >>> Department of Structural Biology >>> Biozentrum, Universität Basel >>> Klingelbergstrasse 70 >>> 4056 Basel >>> Switzerland >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-devel mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-devel >>> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-devel mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-devel > > -- > Sébastien Morin, Ph.D. > Postdoctoral Fellow, S. Grzesiek NMR Laboratory > Department of Structural Biology > Biozentrum, Universität Basel > Klingelbergstrasse 70 > 4056 Basel > Switzerland > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
