Dear Maddy, Due to the large number of changes between relax 1.3.11 and the main 1.3 line, this problem has effectively healed itself! Are you able to test the 1.3 line to see if the problem really has disappeared? Otherwise, soon I will be releasing relax 1.3.13 with a new GUI design which could be used for testing.
Cheers, Edward On 24 August 2011 14:36, anonymous <[email protected]> wrote: > > URL: > <http://gna.org/bugs/?18554> > > Summary: dauvergne protocol sample script > Project: relax > Submitted by: None > Submitted on: Wed 24 Aug 2011 12:36:22 PM UTC > Category: relax sample scripts > Severity: 3 - Normal > Priority: 5 - Normal > Status: None > Privacy: Public > Assigned to: None > Originator Name: Madeleine Strickland > Originator Email: [email protected] > Open/Closed: Open > Discussion Lock: Any > Release: 1.3.11 > Operating System: GNU/Linux > > _______________________________________________________ > > Details: > > Since ri_label has been replaced with ri_id and ri_type in 1.3.11, the > program needs to be updated to change what is expected of the 13 elements > described by 'RELAX_DATA' as has been done for 'relax_data.read'. Also, the > script dauvergen_protocol.py needs to be updated to reflect this. I think > this is the only script which uses 'RELAX_DATA'? > > See error below. > >> ------------------------------ >> None 2033 HIS None N >> None 2034 HIS None N >> None 2035 HIS None N >> None 2036 HIS None N >> None 2037 HIS None N >> None 2038 HIS None N >> Traceback (most recent call last): >> File "/usr/local/bin/relax", line 7, in <module> >> relax.start() >> File "/usr/local/relax/relax.py", line 80, in start >> Relax(mode) >> File "/usr/local/relax/relax.py", line 149, in __init__ >> self.interpreter.run(self.script_file) >> File "/usr/local/relax/prompt/interpreter.py", line 297, in run >> return run_script(intro=self.__intro_string, local=locals(), >> script_file=script_file, quit=self.__quit_flag, >> show_script=self.__show_script, >> raise_relax_error=self.__raise_relax_error) >> File "/usr/local/relax/prompt/interpreter.py", line 606, in run_script >> return console.interact(intro, local, script_file, quit, >> show_script=show_script, raise_relax_error=raise_relax_error) >> File "/usr/local/relax/prompt/interpreter.py", line 492, in > interact_script >> exec_script(script_file, local) >> File "/usr/local/relax/prompt/interpreter.py", line 380, in exec_script >> runpy.run_module(module, globals) >> File "/usr/local/lib/python2.6/runpy.py", line 140, in run_module >> fname, loader, pkg_name) >> File "/usr/local/lib/python2.6/runpy.py", line 34, in _run_code >> exec code in run_globals >> File >> > "/home/ms4225/nmr_data/IGF2R/dynamics/relax/chicken/FINALC_110823_relax11/full_analysis_localtm.py", >> line 199, in <module> >> dAuvergne_protocol(diff_model=DIFF_MODEL, mf_models=MF_MODELS, >> local_tm_models=LOCAL_TM_MODELS, pdb_file=PDB_FILE, seq_args=SEQ_ARGS, >> het_name=HET_NAME, attached_name=ATTACHED_NAME, relax_data=RELAX_DATA, >> unres=UNRES, exclude=EXCLUDE, bond_length=BOND_LENGTH, csa=CSA, >> hetnuc=HETNUC, proton=PROTON, grid_inc=GRID_INC, min_algor=MIN_ALGOR, >> mc_num=MC_NUM, conv_loop=CONV_LOOP) >> File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 228, >> in __init__ >> self.execute() >> File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 556, >> in execute >> self.multi_model(local_tm=True) >> File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 821, >> in multi_model >> self.interpreter.relax_data.read(ri_label=data[0], frq_label=data[1], >> frq=data[2], file=data[3], dir=data[4], mol_name_col=data[5], >> res_num_col=data[6], res_name_col=data[7], spin_num_col=data[8], >> spin_name_col=data[9], data_col=data[10], error_col=data[11], >> sep=data[12]) >> TypeError: read() got an unexpected keyword argument 'ri_label' > > > > > > _______________________________________________________ > > Reply to this item at: > > <http://gna.org/bugs/?18554> > > _______________________________________________ > Message sent via/by Gna! > http://gna.org/ > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel > _______________________________________________ relax (http://nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
