Sorry, I didn't realise we were in this patch of text! Oh well, it's easy to fix.
Regards, Edward On 5 September 2012 16:54, Sébastien Morin <[email protected]> wrote: > Hi, > > I had this impression, but you seemed so convinced... :p > > Cheers, > > Séb :) > > > > On 12-09-05 4:44 PM, Edward d'Auvergne wrote: >> >> Hi, >> >> I just realised that this is the part where the sample script has been >> reproduced. Sorry, it would be better to not have the \citet >> citations. The maths should be removed as well. This is supposed to >> be a verbatim copy of the text of the script, so no fancy formatting. >> >> Regards, >> >> Edward >> >> >> On 5 September 2012 14:49, Sébastien Morin <[email protected]> >> wrote: >>> >>> HI, >>> >>> I just corrected this and more... >>> >>> >>> Séb :) >>> >>> >>> >>> On 12-09-05 2:36 PM, Edward d'Auvergne wrote: >>>> >>>> Hi, >>>> >>>> I just noticed the reference "Morin \& Gagne (2009a) J. Biomol. NMR, >>>> 45: 361-372" in that text! Could you change it to >>>> "\citet{MorinGagne09}" to fit into the bibtex system? >>>> >>>> Cheers, >>>> >>>> Edward >>>> >>>> >>>> On 5 September 2012 14:25, <[email protected]> wrote: >>>>> >>>>> Author: semor >>>>> Date: Wed Sep 5 14:25:48 2012 >>>>> New Revision: 17456 >>>>> >>>>> URL: http://svn.gna.org/viewcvs/relax?rev=17456&view=rev >>>>> Log: >>>>> Made some corrections to the formatting of math symbols in Latex. >>>>> >>>>> >>>>> Modified: >>>>> trunk/docs/latex/consistency_tests.tex >>>>> >>>>> Modified: trunk/docs/latex/consistency_tests.tex >>>>> URL: >>>>> >>>>> http://svn.gna.org/viewcvs/relax/trunk/docs/latex/consistency_tests.tex?rev=17456&r1=17455&r2=17456&view=diff >>>>> >>>>> >>>>> ============================================================================== >>>>> --- trunk/docs/latex/consistency_tests.tex (original) >>>>> +++ trunk/docs/latex/consistency_tests.tex Wed Sep 5 14:25:48 2012 >>>>> @@ -64,7 +64,7 @@ >>>>> \\ >>>>> Severe artifacts can be introduced if model-free analysis is >>>>> performed >>>>> from inconsistent multiple magnetic field datasets. The use of simple >>>>> tests >>>>> as validation tools for the consistency assessment can help avoid such >>>>> problems in order to extract more reliable information from spin >>>>> relaxation >>>>> experiments. In particular, these tests are useful for detecting >>>>> inconsistencies arising from R2 data. Since such inconsistencies can >>>>> yield >>>>> artifactual Rex parameters within model-free analysis, these tests >>>>> should be >>>>> use routinely prior to any analysis such as model-free calculations. \\ >>>>> \\ >>>>> -This script will allow one to calculate values for the three >>>>> consistency >>>>> tests J(0), F\_eta and F\_R2. Once this is done, qualitative analysis >>>>> can be >>>>> performed by comparing values obtained at different magnetic fields. >>>>> Correlation plots and histograms are useful tools for such comparison, >>>>> such >>>>> as presented in Morin \& Gagne (2009a) J. Biomol. NMR, 45: 361-372. \\ >>>>> +This script will allow one to calculate values for the three >>>>> consistency >>>>> tests $J(0)$, $F\_eta$ and $F\_{R_2}$. Once this is done, qualitative >>>>> analysis can be performed by comparing values obtained at different >>>>> magnetic >>>>> fields. Correlation plots and histograms are useful tools for such >>>>> comparison, such as presented in Morin \& Gagne (2009a) J. Biomol. NMR, >>>>> 45: >>>>> 361-372. \\ >>>>> \\ >>>>> \\ >>>>> References \\ >>>>> @@ -76,18 +76,18 @@ >>>>> \\ >>>>> The origins of the equations used in the approach: \\ >>>>> \\ >>>>> - J(0): \\ >>>>> + $J(0)$: \\ >>>>> Farrow et al. (1995) Spectral density function mapping using >>>>> 15N relaxation data exclusively. J. Biomol. NMR, 6: 153-162. >>>>> http://dx.doi.org/10.1007/BF00211779 \\ >>>>> \\ >>>>> - F\_eta: \\ >>>>> - Fushman et al. (1998) Direct measurement of 15N chemical shift >>>>> anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952. >>>>> http://dx.doi.org/10.1021/ja981686m \\ >>>>> - \\ >>>>> - F\_R2: \\ >>>>> - Fushman et al. (1998) Direct measurement of 15N chemical shift >>>>> anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952. >>>>> http://dx.doi.org/10.1021/ja981686m \\ >>>>> + $F\_eta$: \\ >>>>> + Fushman et al. (1998) Direct measurement of $^{15}$N chemical >>>>> shift anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952. >>>>> http://dx.doi.org/10.1021/ja981686m \\ >>>>> + \\ >>>>> + $F\_{R_2}$: \\ >>>>> + Fushman et al. (1998) Direct measurement of $^{15}$N chemical >>>>> shift anisotropy in solution. J. Am. Chem. Soc., 120: 10947-10952. >>>>> http://dx.doi.org/10.1021/ja981686m \\ >>>>> \\ >>>>> A study where consistency tests were used: \\ >>>>> \\ >>>>> - Morin \& Gagne (2009) NMR dynamics of PSE-4 beta-lactamase: An >>>>> interplay of ps-ns order and us-ms motions in the active site. Biophys. >>>>> J., >>>>> 96: 4681-4691. http://dx.doi.org/10.1016/j.bpj.2009.02.068 \\ >>>>> + Morin \& Gagne (2009) NMR dynamics of PSE-4 $\beta$-lactamase: An >>>>> interplay of ps-ns order and $\mu$s-ms motions in the active site. >>>>> Biophys. >>>>> J., 96: 4681-4691. http://dx.doi.org/10.1016/j.bpj.2009.02.068 \\ >>>>> """ \\ >>>>> \\ >>>>> \# Create the run. \\ >>>>> >>>>> >>>>> _______________________________________________ >>>>> relax (http://www.nmr-relax.com) >>>>> >>>>> This is the relax-commits mailing list >>>>> [email protected] >>>>> >>>>> To unsubscribe from this list, get a password >>>>> reminder, or change your subscription options, >>>>> visit the list information page at >>>>> https://mail.gna.org/listinfo/relax-commits >>>> >>>> _______________________________________________ >>>> relax (http://www.nmr-relax.com) >>>> >>>> This is the relax-devel mailing list >>>> [email protected] >>>> >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-devel >>> >>> >>> -- >>> Sébastien Morin, Ph.D. >>> Postdoctoral Fellow, S. Bernèche Laboratory >>> Department of Bioinformatics >>> Biozentrum, Universität Basel >>> Klingelbergstrasse 50/70 >>> 4056 Basel >>> Switzerland >>> ---- sebastien DOT morin AT unibas DOT ch ---- >>> > > -- > Sébastien Morin, Ph.D. > Postdoctoral Fellow, S. Bernèche Laboratory > Department of Bioinformatics > Biozentrum, Universität Basel > Klingelbergstrasse 50/70 > 4056 Basel > Switzerland > ---- sebastien DOT morin AT unibas DOT ch ---- > > > _______________________________________________ > relax (http://www.nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
