URL:
<http://gna.org/bugs/?20253>
Summary: The multi-processor code is broken because of the
missing Queue module.
Project: relax
Submitted by: bugman
Submitted on: Sat 20 Oct 2012 04:35:14 PM GMT
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: bugman
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: 2.1.2
Operating System: All systems
_______________________________________________________
Details:
Running the multi-processor code, in this case for the Frame Order theory,
triggers the bug in all cases with the error:
relax> calc(verbosity=1)
Numerical integration via the quasi-random Sobol' sequence.
Number of integration points: 1000
Base data: ['PCSs']
Traceback (most recent call last):
File "/data/edau/relax/branches/frame_order_testing/multi/processor.py",
line 479, in run
self.callback.init_master(self)
File "/data/edau/relax/branches/frame_order_testing/multi/__init__.py", line
318, in default_init_master
self.master.run()
File "/data/edau/relax/branches/frame_order_testing/relax.py", line 186, in
run
self.interpreter.run(self.script_file)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py",
line 278, in run
return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, quit=self.__quit_flag,
show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py",
line 585, in run_script
return console.interact(intro, local, script_file, quit,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py",
line 468, in interact_script
exec_script(script_file, local)
File "/data/edau/relax/branches/frame_order_testing/prompt/interpreter.py",
line 341, in exec_script
runpy.run_module(module, globals)
File "/usr/lib64/python2.6/runpy.py", line 140, in run_module
fname, loader, pkg_name)
File "/usr/lib64/python2.6/runpy.py", line 34, in _run_code
exec code in run_globals
File
"/data/edau/relax/branches/frame_order_testing/test_suite/shared_data/frame_order/cam/pseudo_ellipse/multi_processor_test.py",
line 98, in <module>
calc()
File "/data/edau/relax/branches/frame_order_testing/prompt/uf_objects.py",
line 219, in __call__
self._backend(*new_args, **uf_kargs)
File
"/data/edau/relax/branches/frame_order_testing/generic_fns/minimise.py", line
81, in calc
calculate(verbosity=verbosity)
File
"/data/edau/relax/branches/frame_order_testing/specific_fns/frame_order.py",
line 1585, in calculate
chi2 = model.func(param_vector)
File
"/data/edau/relax/branches/frame_order_testing/maths_fns/frame_order/__init__.py",
line 1216, in func_pseudo_ellipse_qrint
self.processor.run_queue()
File "/data/edau/relax/branches/frame_order_testing/multi/processor.py",
line 622, in run_queue
self.run_command_queue(lqueue)
File "/data/edau/relax/branches/frame_order_testing/multi/processor.py",
line 575, in run_command_queue
result_queue = Threaded_result_queue(self)
File "/data/edau/relax/branches/frame_order_testing/multi/result_queue.py",
line 82, in __init__
self.queue = Queue.Queue()
NameError: global name 'Queue' is not defined
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 0.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 366 on
node localhost exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?20253>
_______________________________________________
Message sent via/by Gna!
http://gna.org/
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-devel mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel
