URL:
<http://gna.org/bugs/?20378>
Summary: The Bruker.test_bug_20152_read_dc_file GUI test
fails when running in GUI mode.
Project: relax
Submitted by: bugman
Submitted on: Wed 19 Dec 2012 04:21:47 PM GMT
Category: Test suite
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: bugman
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: 2.1.2
Operating System: All systems
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Details:
The error message from the test suite is:
======================================================================
FAIL: Test the reading of a DC file, catching bug #20152
(https://gna.org/bugs/?20152).
----------------------------------------------------------------------
relax> pipe.create(pipe_name='mf', pipe_type='mf', bundle=None)
relax>
structure.read_pdb(file='/data/edau/relax/relax-trunk/test_suite/shared_data/structures/1UBQ_H_trunc.pdb',
dir=None, read_mol=None, set_mol_name=None, read_model=None,
set_model_num=None, parser='internal')
Internal relax PDB parser.
Opening the file
'/data/edau/relax/relax-trunk/test_suite/shared_data/structures/1UBQ_H_trunc.pdb'
for reading.
Adding molecule '1UBQ_H_trunc_mol1' to model None (from the original molecule
number 1 of model None)
relax> structure.load_spins(spin_id=None, ave_pos=True)
Adding the following spins to the relax data store.
# mol_name res_num res_name spin_num spin_name
1UBQ_H_trunc_mol1 1 MET 1 N
1UBQ_H_trunc_mol1 2 GLN 9 N
1UBQ_H_trunc_mol1 3 ILE 18 N
relax> bruker.read(ri_id='r1_700',
file='/data/edau/relax/relax-trunk/test_suite/shared_data/bruker_files/T1_demo_1UBQ_H_trunc.txt',
dir=None)
Opening the file
'/data/edau/relax/relax-trunk/test_suite/shared_data/bruker_files/T1_demo_1UBQ_H_trunc.txt'
for reading.
RelaxWarning: The spin '#1UBQ_H_trunc_mol1:1@N' is already named.
RelaxWarning: The spin '#1UBQ_H_trunc_mol1:2@N' is already named.
RelaxWarning: The spin '#1UBQ_H_trunc_mol1:3@N' is already named.
RelaxError: The old Protein Dynamics Center (PDC) files are not supported
Traceback (most recent call last):
File "test_suite/gui_tests/bruker.py", line 130, in
test_bug_20152_read_dc_file
self.assertEqual(error, True)
AssertionError: False != True
----------------------------------------------------------------------
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