Hi, If you are totally stuck, as this is an nasty scons installation issue, you can manually compile the C modules. From the message which missed the mailing list (visible below), I have modified the command that scons normally runs for your Mac OS X system:
gcc -o target_functions/c_chi2.os -c -I/Library/Frameworks/Python.framework/Versions/7.3/include/python2.7 -arch i386 -arch x86_64 -fPIC target_functions/c_chi2.c gcc -o target_functions/exponential.os -c -I/Library/Frameworks/Python.framework/Versions/7.3/include/python2.7 -arch i386 -arch x86_64 -fPIC target_functions/exponential.c gcc -o target_functions/relax_fit.os -c -I/Library/Frameworks/Python.framework/Versions/7.3/include/python2.7 -arch i386 -arch x86_64 -fPIC target_functions/relax_fit.c gcc -o target_functions/relax_fit.so -bundle -bundle_loader /Library/Frameworks/Python.framework/Versions/7.3/bin/python2.7 -dynamic -undefined dynamic_lookup -arch i386 -arch x86_64 target_functions/c_chi2.os target_functions/exponential.os target_functions/relax_fit.os This builds a 32 and 64-bit module for your specific Python Framework, which should run fine. I removed the ppc target that I use for the released Mac OS X application. These need to be run in the base relax directory. I hope this solves the problem. Regards, Edward On 25 July 2013 17:05, Dominique Marion (IBS) <[email protected]> wrote: > Hi, > > Here is the output of the command you suggested. One module is not > compiled... but I don't know how to solve it. On the other hand, the error > message issued by scons is still there. > > Dominique > > ________________________________ > > ImportError: relaxation curve fitting is unavailable, the corresponding C > modules have not been compiled. > > Processor fabric: Uni-processor. > > > Hardware information: > Machine: x86_64 > Processor: i386 > Endianness: little > Total RAM size: ? Mb > Total swap size: ? Mb > > Operating system information: > System: Darwin > Release: 12.4.0 > Version: Darwin Kernel Version 12.4.0: Wed May 1 > 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 > Mac version: 10.8.4 (, , ) x86_64 > Distribution: > Full platform string: Darwin-12.4.0-x86_64-i386-32bit > > Python information: > Architecture: 32bit > Python version: 2.7.3 > Python branch: > Python build: default, Apr 12 2012 11:28:34 > Python compiler: GCC 4.0.1 (Apple Inc. build 5493) > Libc version: > Python implementation: CPython > Python revision: > Python executable: > /Library/Frameworks/Python.framework/Versions/7.3/Resources/Python.app/Contents/MacOS/Python > Python flags: sys.flags(debug=0, py3k_warning=0, > division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0, > dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0, > tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0) > Python float info: sys.float_info(max=1.7976931348623157e+308, > max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021, > min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, > radix=2, rounds=1) > Python module path: > ['/Volumes/Overhauser/Dominique/Documents/Documents_2013/Juillet_2013/relax_disp', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/setuptools-0.9.7-py2.7.egg', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python27.zip', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/plat-darwin', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/plat-mac', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/plat-mac/lib-scriptpackages', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-tk', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-old', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-dynload', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages', > '/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/PIL', > '/Library/Python/2.7/site-packages'] > > Python packages and modules (most are optional): > > Name Installed Version Path > minfx True 1.0.5 > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/minfx > bmrblib True 1.0.3 > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/bmrblib > numpy True 1.6.1 > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/numpy > scipy True 0.10.1 > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/scipy > wxPython True 2.8.10.1 (mac-unicode) > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-packages/wx > mpi4py False > epydoc False > optparse True 1.5.3 > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/optparse.pyc > readline True > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-dynload/readline.so > profile True > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/profile.pyc > bz2 True > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/lib-dynload/bz2.so > gzip True > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/gzip.pyc > io True > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/io.pyc > xml True 0.8.4 (internal) > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/xml/__init__.pyc > xml.dom.minidom True > /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/xml/dom/minidom.pyc > > relax information: > Version: repository checkout > Processor fabric: Uni-processor. > > relax C modules: > > Module Compiled File type Path > target_functions.relax_fit False > > > [DominiqueMacBook:Documents_2013/Juillet_2013/relax_disp] Dominique% > > On 25/7/13 14:25 , Edward d'Auvergne wrote: > > One useful trick for finding out what is missing it to run relax with: > > $ relax --info > > It will print out a status report of all the modules. However this > minimally requires Python, numpy, and minfx to be installed. > > Regards, > > Edward > > > > On 25 July 2013 14:22, Dominique Marion (IBS) <[email protected]> > wrote: > > I have installed again minfx... but some dependency seems to be missing. > > Dominique > > >> scons > scons: Reading SConscript files ... > The dependency 'minfx' has not been installed (see > https://gna.org/projects/minfx/). > > > > On 25/7/13 14:15 , Edward d'Auvergne wrote: > > Ah, I have to add that to the wiki page > (http://wiki.nmr-relax.com/Installation_linux). To compile the C > modules, if the instructions on that page have been followed and the > python-headers and scons are installed, is simply a matter of typing: > > $ scons > > This needs to be in the relax_disp base directory. > > Regards, > > Edward > > > > > > > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
