Hi Edward. The line is: @ yaxis label "\qR\s1\xr\B\N\Q (rad.s\S-1\N)"
which is the same for all residues: example: disp_3_N.agr for all model folders. Troels Emtekær Linnet 2013/9/4 Edward d'Auvergne <[email protected]>: > Hi, > > The 'r2a' parameter is defined with: > > self.PARAMS.add('r2a', scope='spin', default=15.0, desc='The > transversal relaxation rate for state A in the absence of exchange', > set='params', py_type=list, grace_string='\\qR\\s2,A\\N\\Q > (rad.s\\S-1\\N)', err=True, sim=True) > > Can you open the Grace file in a text editor and find this R1rho text > and copy the line here? If you look in all of the parameter > definitions, there is R1rho defined. For the R1rho-type experiments > the relaxation in the absence of exchange, R1rho', is simply stored as > and reported as R2, just as in the CPMG-type experiments. Could you > name the files affected and the directories they are located in? This > is very confusing. > > Regards, > > Edward > > > > > On 4 September 2013 09:16, Troels Emtekær Linnet <[email protected]> wrote: >> I made this analysis: >> >> The state 'ini_setup.bz2' is after the setup of reading intensities >> and making spectra settings. >> >> In the the ''TSMFK01', model I have used the r2a parameter. >> Is this reserved for R1rho ? >> >> The "funny" thing is, that when I look in the folder for the other >> models (parameter r2), the graph still is R1rho. >> Is there a switch somewhere? >> >> Best >> Troels >> >> --------------- >> import os >> from auto_analyses.relax_disp import Relax_disp >> >> # Load the initial state setup >> state.load(state='ini_setup.bz2') >> >> # Set settings for run. >> results_directory = os.path.join(os.getcwd(),"model_sel_analyt") >> pipe_name = 'base pipe'; pipe_bundle = 'relax_disp' >> MODELS = ['R2eff', 'No Rex', 'TSMFK01', 'LM63', 'CR72', 'CR72 full', 'IT99'] >> GRID_INC = 21; MC_NUM = 10; MODSEL = 'AIC' >> >> # Execute >> Relax_disp(pipe_name=pipe_name, pipe_bundle=pipe_bundle, >> results_dir=results_directory, models=MODELS, grid_inc=GRID_INC, >> mc_sim_num=MC_NUM, modsel=MODSEL) >> ------------ >> >> Troels Emtekær Linnet >> >> >> 2013/9/4 Edward d'Auvergne <[email protected]>: >>> Hi, >>> >>> That's quite strange. According to the parameter definitions in >>> specific_analyses.relax_disp.api: >>> >>> self.PARAMS.add('r2', scope='spin', default=15.0, desc='The >>> transversal relaxation rate', set='params', py_type=list, >>> grace_string='\\qR\\s2\\N\\Q (rad.s\\S-1\\N)', err=True, sim=True) >>> >>> That Grace string should simply produce R_2. In which context do you see >>> this? >>> >>> Regards, >>> >>> Edward >>> >>> >>> On 4 September 2013 08:37, Troels Emtekær Linnet <[email protected]> wrote: >>>> Hi. >>>> >>>> I noticed that the Y-axis for the graph result of residue files denotes >>>> R1rho. >>>> >>>> Should the Y-axis not be labelled R_2^{eff} ?? >>>> >>>> Best >>>> Troels Emtekær Linnet >>>> >>>> _______________________________________________ >>>> relax (http://www.nmr-relax.com) >>>> >>>> This is the relax-devel mailing list >>>> [email protected] >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
