Hi Edward.
The errors I get is written below:
I don't know if it is a packaging error, or if it is related to relax?
But it seems weird, and I would just like to hear if you have the same
error. :-)
Best
Troels
relax> import matplotlib.pyplot as plt
Traceback (most recent call last):
File "<console>", line 1, in <module>
File "/usr/lib64/python2.6/site-packages/matplotlib/pyplot.py", line 6,
in <module>
from matplotlib.figure import Figure, figaspect
File "/usr/lib64/python2.6/site-packages/matplotlib/figure.py", line 18,
in <module>
from axes import Axes, SubplotBase, subplot_class_factory
File "/usr/lib64/python2.6/site-packages/matplotlib/axes.py", line 17, in
<module>
import matplotlib.dates as mdates
File "/usr/lib64/python2.6/site-packages/matplotlib/dates.py", line 104,
in <module>
from dateutil.rrule import rrule, MO, TU, WE, TH, FR, SA, SU, YEARLY, \
File "/usr/lib/python2.6/site-packages/dateutil/rrule.py", line 26, in
<module>
MDAY366MASK =
tuple(M31+M29+M31+M30+M31+M30+M31+M31+M30+M31+M30+M31+M31[:7])
TypeError: unsupported operand type(s) for +: 'xrange' and 'xrange'
relax>
########################3
[tlinnet@haddock ~]$ relax_disp -i
relax repository checkout rNone
None
Molecular dynamics by NMR data analysis
Copyright (C) 2001-2006 Edward d'Auvergne
Copyright (C) 2006-2013 the relax development team
This is free software which you are welcome to modify and redistribute
under the conditions of the
GNU General Public License (GPL). This program, including all modules, is
licensed under the GPL
and comes with absolutely no warranty. For details type 'GPL' within the
relax prompt.
Assistance in using the relax prompt and scripting interface can be
accessed by typing 'help' within
the prompt.
Processor fabric: Uni-processor.
Hardware information:
Machine: x86_64
Processor: x86_64
Endianness: little
Total RAM size: 24013 Mb
Total swap size: 26191 Mb
Operating system information:
System: Linux
Release: 2.6.32-358.18.1.el6.x86_64
Version: #1 SMP Fri Aug 2 17:04:38 EDT 2013
GNU/Linux version: Red Hat Enterprise Linux Server 6.4 Santiago
Distribution: redhat 6.4 Santiago
Full platform string:
Linux-2.6.32-358.18.1.el6.x86_64-x86_64-with-redhat-6.4-Santiago
Python information:
Architecture: 64bit ELF
Python version: 2.6.6
Python branch: tags/r266
Python build: r266:84292, May 27 2013 05:35:12
Python compiler: GCC 4.4.7 20120313 (Red Hat 4.4.7-3)
Libc version: glibc 2.2.5
Python implementation: CPython
Python revision: 84292
Python executable: /usr/bin/python
Python flags: sys.flags(debug=0, py3k_warning=0,
division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0,
dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0,
tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0)
Python float info: sys.floatinfo(max=1.7976931348623157e+308,
max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021,
min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.2204460492503131e-16,
radix=2, rounds=1)
Python module path: ['/sbinlab2/software/NMR-relax/relax_disp',
'/sbinlab2/software/CCP4-Linux_6.3.0/ccp4-6.3.0/share/python',
'/sbinlab2/tlinnet', '/sbinlab2/software/x64/haddock2.1',
'/sbinlab2/software/x64/lib64/python2.6/site-packages',
'/sbinlab2/software/x64/ccpnmr/ccpnmr2.3/python',
'/usr/lib64/python26.zip', '/usr/lib64/python2.6',
'/usr/lib64/python2.6/plat-linux2', '/usr/lib64/python2.6/lib-tk',
'/usr/lib64/python2.6/lib-old', '/usr/lib64/python2.6/lib-dynload',
'/usr/lib64/python2.6/site-packages',
'/usr/lib64/python2.6/site-packages/gst-0.10',
'/usr/lib64/python2.6/site-packages/gtk-2.0',
'/usr/lib64/python2.6/site-packages/webkit-1.0',
'/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode',
'/usr/lib/python2.6/site-packages',
'/usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info']
Python packages and modules (most are optional):
Name Installed Version Path
minfx True 1.0.5
/usr/lib/python2.6/site-packages/minfx
bmrblib True 1.0.3
/usr/lib/python2.6/site-packages/bmrblib
numpy True 1.4.1
/usr/lib64/python2.6/site-packages/numpy
scipy True 0.7.2
/usr/lib64/python2.6/site-packages/scipy
wxPython True 2.8.12.0 (gtk2-unicode)
/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode/wx
mpi4py True 1.3.1
/usr/lib64/python2.6/site-packages/mpi4py
epydoc False
optparse True 1.5.3
/usr/lib64/python2.6/optparse.pyc
readline True
/usr/lib64/python2.6/lib-dynload/readline.so
profile True
/usr/lib64/python2.6/profile.pyc
bz2 True
/usr/lib64/python2.6/lib-dynload/bz2.so
gzip True
/usr/lib64/python2.6/gzip.pyc
io True
/usr/lib64/python2.6/io.pyc
xml True 0.8.4 (PyXML)
/usr/lib64/python2.6/site-packages/_xmlplus/__init__.pyc
xml.dom.minidom True
/usr/lib64/python2.6/site-packages/_xmlplus/dom/minidom.pyc
relax information:
Version: repository checkout
Processor fabric: Uni-processor.
relax C modules:
Module Compiled File type
Path
target_functions.relax_fit True ELF 64-bit LSB shared object,
x86-64, version 1 (SYSV), dynamically linked, not stripped
/sbinlab2/software/NMR-relax/relax_disp/target_functions/relax_fit.so
##########################################
2013/10/18 Edward d'Auvergne <[email protected]>
> Hi Troels,
>
> It should be possible to get your matplotlib plotting code into the
> relax library, just as the Grace plotting code is. The Grace code is
> at lib/software/grace.py. Maybe I should create a new package called
> lib.plotting and shift the Grace module there? Then all the plotting
> modules - grace, opendx, matplotlib, gnuplot, etc. - can sit together.
> New user functions can be created by copying user_functions.grace and
> pipe_control.grace to user_functions.matplotlib and
> pipe_control.matplotlib. The pipe_control.matplotlib module simply
> assembles the data from the relax data store and passes it into
> lib.software.matplotlib for plotting.
>
> As for the import error, could you copy and paste the full message?
> This is not normal and it could have something to do with different
> Python versions being used by relax and when you type 'python'. Could
> you run 'relax -i' and check that the Python binaries are identical?
> Cheers. It should be possible to have this running!
>
> Regards,
>
> Edward
>
>
>
> On 18 October 2013 09:25, Troels Emtekær Linnet <[email protected]>
> wrote:
> > Hi Edward.
> >
> > I am trying to plot some custom made graphs via matplotlib in relax.
> >
> > Basically, I extract the r2 values for each spin, and plot them.
> >
> > But I get a package error when I do
> >
> > import matplotlib.pyplot as plt
> >
> > It is a dateutil error? And I am not able to pinpoint the error.
> >
> > I have checked that I can do the import in my normal python installation.
> >
> > My current solution is to extract the wanted values from relax into a
> > dictionary, and dump the dictionary in json format.
> >
> > Then make a normal python script, that reads the json dictionary, and
> plot
> > the values.
> >
> > I would be interested to hear if you have the same problem importing
> > matplotlib in relax, or if it is only my setup?
> >
> > Can this be fixed?
> >
> > Another solution could be to open a dumped relax saved state in a python
> > section and run through the data.
> > Is it possible to do this?
> >
> > Best
> > Troels
> >
> >
> > _______________________________________________
> > relax (http://www.nmr-relax.com)
> >
> > This is the relax-devel mailing list
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> >
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> >
>
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