Hi Edward. The Menu.py and MessageDialog.py functions fine.
I will wait and see what happens. And if it drives me crazy, I will try to go for another round. Best Troels 2013/12/4 Edward d'Auvergne <edw...@nmr-relax.com>: > Hi, > > It is a very tough problem to solve, and it is likely to be a wxPython > bug. Oh, what if you run the Menu.py wx_demo? Or MessageDialog.py? > The testing in http://wiki.nmr-relax.com/Installation_test#wxPython_test > only checks a tiny fraction of all wxPython functionality used in > relax so it may not show the problem. It could be that one of the > PNGs in wxPython, for example those used in the message dialogs, are > corrupted (according to the PNG people nowadays). It could be that > one of the standard Mac OS X icons distributed with the operating > system is giving the iCCP warning too. > > Regards, > > Edward > > > > On 4 December 2013 11:49, Troels Emtekær Linnet <tlin...@nmr-relax.com> wrote: >> Hi Edward. >> >> The code change did not make a difference. >> >> The wxPython demo runs fine: >> http://wiki.nmr-relax.com/Installation_test#wxPython_test >> >> I see the smiley face fine. >> In the terminal there are still the fonts issue, but not the iCCP warning. >> >> Hm, I guess i will see what happens if I start using the GUI with >> relax on real data applications. >> Anyway, I will probably run a lot more scripting than GUI. >> >> And I will wait to see if there comes a fix for wxPython for Mavericks. >> >> Best >> Troels >> >> >> 2013/12/4 Edward d'Auvergne <edw...@nmr-relax.com>: >>> Hi, >>> >>> There are literally thousands of places where the wx.CallAfter() call >>> could be used. This may not even fix the problem. Does the error go >>> away if you make the change? On a different note, do you see those >>> wxPython iCCP and font issues if you run the wx_demo? If so, then >>> there is no point searching for these errors in relax, for there are >>> none. It will be a wxPython issue. My feeling is that everything you >>> see is due to problems with wxPython, as my tests on multiple >>> operating system, both 32 and 64-bit show nothing. The crash in the >>> test suite might be fixable from within relax however. >>> >>> Regards, >>> >>> Edward >>> >>> >>> On 4 December 2013 11:26, Troels Emtekær Linnet <tlin...@nmr-relax.com> >>> wrote: >>>> Hm. >>>> >>>> It seems that many people have problems with wxPython 2.9 on Mavericks. >>>> I have tried installing wxPython 2.8, but that would not work on my system. >>>> >>>> The GUI will show up when starting relax. >>>> Complaining about: "iCCP: known incorrect sRGB profile". >>>> And terminal will show: >>>> >>>> " >>>> 2013-12-03 22:56:31.956 Python[1180:d0b] CoreText performance note: Client >>>> called CTFontCreateWithName() using name ".Lucida Grande UI" and got font >>>> with >>>> PostScript name ".LucidaGrandeUI". For best performance, only use >>>> PostScript >>>> names when calling this API. >>>> 2013-12-03 22:56:31.956 Python[1180:d0b] CoreText performance note: Set a >>>> breakpoint on CTFontLogSuboptimalRequest to debug. >>>> 2013-12-03 22:56:37.521 Python[1180:d0b] CoreText performance note: Client >>>> called CTFontCreateWithName() using name ".Lucida Grande UI" and got font >>>> with >>>> PostScript name ".LucidaGrandeUI". For best performance, only use >>>> PostScript >>>> names when calling this API. >>>> " >>>> >>>> This problem has been reported before: >>>> http://successfulsoftware.net/2013/10/23/fixing-qt-4-for-mac-os-x-10-9-mavericks/ >>>> https://bugreports.qt-project.org/browse/QTBUG-32789 >>>> http://wxpython-users.1045709.n5.nabble.com/another-possible-issue-with-new-Mac-OS-Mavericks-td5719024.html >>>> >>>> >>>> In the relax GUI: >>>> >>>> The Unit test will perform fine. >>>> The GUI test will crash relax. >>>> The system test will run for a long time, and crash at some point. >>>> (After 30 dots ?) >>>> It is hard to see at which points it crashes. >>>> >>>> The system test performed in terminal goes fine. >>>> >>>> >>>> ------- >>>> I found one instance of "AppendText" in line 1048. >>>> Should I try to alter it ? >>>> >>>> from: >>>> self.AppendText(string_list[i]) >>>> >>>> to: >>>> wx.CallAfter(self.textArea.AppendText, string_list[i]) >>>> or >>>> wx.CallAfter(self.AppendText, string_list[i]) >>>> >>>> >>>> ------- >>>> >>>> >>>> >>>> >>>> [tlinnet@haddock relax_trunk]$ grep -r "AppendText" ./gui >>>> Binary file ./gui/controller.pyc matches >>>> ./gui/controller.py: self.AppendText(string_list[i]) >>>> >>>> >>>> [tlinnet@haddock relax_trunk]$ grep -r "wx.CallAfter(" ./gui >>>> ./gui/spin_viewer/frame.py: wx.CallAfter(item.Enable, >>>> enable) >>>> ./gui/spin_viewer/frame.py: wx.CallAfter(self.bar.EnableTool, >>>> self.spin_loader_id, enable) >>>> ./gui/spin_viewer/frame.py: wx.CallAfter(self.pipe_name.Enable, >>>> enable) >>>> ./gui/spin_viewer/frame.py: wx.CallAfter(self.refresh_safe) >>>> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >>>> self.TB_FILE_NEW, enable) >>>> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >>>> self.TB_FILE_CLOSE, enable) >>>> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >>>> self.TB_FILE_CLOSE_ALL, enable) >>>> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >>>> self.TB_FILE_OPEN, enable) >>>> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >>>> self.TB_FILE_SAVE, enable) >>>> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >>>> self.TB_FILE_SAVE_AS, enable) >>>> ./gui/relax_gui.py: >>>> wx.CallAfter(self.controller.main_gauge.SetValue, 100) >>>> ./gui/relax_gui.py: wx.CallAfter(self.show_results_viewer_safe, >>>> warn=True) >>>> ./gui/relax_gui.py: wx.CallAfter(dlg.ShowModal) >>>> ./gui/relax_gui.py: wx.CallAfter(self.show_results_viewer_safe, >>>> warn=False) >>>> ./gui/relax_gui.py: wx.CallAfter(self.status_bar.SetStatusText, >>>> "(C) 2001-2013 the relax development team", 0) >>>> ./gui/relax_gui.py: wx.CallAfter(self.status_bar.SetStatusText, >>>> "Current data pipe:", 1) >>>> ./gui/relax_gui.py: wx.CallAfter(self.status_bar.SetStatusText, >>>> pipe, 2) >>>> ./gui/icons.py: wx.CallAfter(self.gui.exit_gui) >>>> ./gui/results_viewer.py: wx.CallAfter(self.pipe_name.Enable, enable) >>>> ./gui/results_viewer.py: wx.CallAfter(self.button_open.Enable, >>>> enable) >>>> ./gui/results_viewer.py: wx.CallAfter(self.refresh_safe) >>>> ./gui/results_viewer.py: wx.CallAfter(self.Raise) >>>> ./gui/analyses/auto_noe.py: >>>> wx.CallAfter(self.field_nmr_frq.Enable, enable) >>>> ./gui/analyses/auto_noe.py: >>>> wx.CallAfter(self.field_results_dir.Enable, enable) >>>> ./gui/analyses/auto_noe.py: >>>> wx.CallAfter(self.spin_systems.Enable, enable) >>>> ./gui/analyses/auto_noe.py: >>>> wx.CallAfter(self.peak_intensity.Enable, enable) >>>> ./gui/analyses/auto_noe.py: >>>> wx.CallAfter(self.button_exec_relax.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.field_results_dir.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.field_pre_run_dir.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.spin_systems.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.field_cluster.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.button_isotope.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.button_r1.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.button_chemical_shift.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.button_interatom_define.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.peak_intensity.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.model_field.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.button_exec_relax.Enable, enable) >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.field_cluster.SetValue, "free spins") >>>> ./gui/analyses/auto_relax_disp.py: >>>> wx.CallAfter(self.field_cluster.SetValue, text) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.field_results_dir.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.spin_systems.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.relax_data.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.button_dipole_pair.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.button_csa.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.button_isotope_heteronuc.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.button_isotope_proton.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.local_tm_model_field.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.mf_model_field.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.grid_inc.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.mc_sim_num.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.max_iter.Enable, enable) >>>> ./gui/analyses/auto_model_free.py: wx.CallAfter(self.mode.Enable, >>>> enable) >>>> ./gui/analyses/auto_model_free.py: >>>> wx.CallAfter(self.button_exec_relax.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.field_nmr_frq.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.field_results_dir.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.spin_systems.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.peak_intensity.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.grid_inc.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.mc_sim_num.Enable, enable) >>>> ./gui/analyses/auto_rx_base.py: >>>> wx.CallAfter(self.button_exec_relax.Enable, enable) >>>> ./gui/analyses/__init__.py: >>>> wx.CallAfter(self.notebook.SetSelection, self._current) >>>> ./gui/analyses/__init__.py: >>>> wx.CallAfter(status.observers.gui_analysis.notify) >>>> ./gui/analyses/base.py: >>>> wx.CallAfter(self.spin_systems.SetValue, >>>> str_to_gui(self.spin_count())) >>>> ./gui/uf_objects.py: wx.CallAfter(app.gui.controller.Raise) >>>> ./gui/relax_prompt.py: wx.CallAfter(self.prompt.Enable, enable) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.Pulse) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.cdp.SetValue, >>>> str_to_gui(pipe)) >>>> ./gui/controller.py: wx.CallAfter(self.name.SetValue, >>>> str_to_gui(name)) >>>> ./gui/controller.py: wx.CallAfter(self.panel_rx.Show) >>>> ./gui/controller.py: wx.CallAfter(self.update_rx) >>>> ./gui/controller.py: wx.CallAfter(self.panel_rx.Hide) >>>> ./gui/controller.py: wx.CallAfter(self.panel_mf.Show) >>>> ./gui/controller.py: wx.CallAfter(self.update_mf) >>>> ./gui/controller.py: wx.CallAfter(self.panel_mf.Hide) >>>> ./gui/controller.py: wx.CallAfter(self.update_gauge) >>>> ./gui/controller.py: wx.CallAfter(self.main_panel.Layout) >>>> ./gui/controller.py: wx.CallAfter(self.timer.Start, 100) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.mc_gauge_rx.SetValue, 100) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.mc_gauge_mf.SetValue, 100) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, 100) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 100) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.mc_gauge_rx.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.mc_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, >>>> 100) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, 100) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 100) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.global_model_mf.SetValue, >>>> str_to_gui(status.auto_analysis[key].diff_model)) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, percent) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >>>> ./gui/controller.py: >>>> wx.CallAfter(self.progress_gauge_mf.SetValue, percent) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, >>>> percent) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >>>> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, >>>> percent) >>>> ./gui/controller.py: wx.CallAfter(self.control.write) >>>> ./gui/controller.py: wx.CallAfter(self.control.write) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_bundle.Enable, >>>> False) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_create.Enable, >>>> False) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_copy.Enable, >>>> False) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_delete.Enable, >>>> False) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_hybrid.Enable, >>>> False) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_switch.Enable, >>>> False) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_bundle.Enable, >>>> True) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_create.Enable, >>>> True) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_copy.Enable, >>>> True) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_delete.Enable, >>>> True) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_hybrid.Enable, >>>> True) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.button_switch.Enable, >>>> True) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.Raise) >>>> ./gui/pipe_editor.py: wx.CallAfter(self.update_grid_safe) >>>> ./gui/interpreter.py: wx.CallAfter(gui_raise, >>>> instance, raise_flag=False) >>>> ./gui/components/base_list.py: wx.CallAfter(self.build_element_safe) >>>> >>>> 2013/12/4 Edward d'Auvergne <edw...@nmr-relax.com>: >>>>> Hi, >>>>> >>>>> It could be related to the first link. These issues are difficult to >>>>> track down and find, as a GUI must naturally run multi-threaded and >>>>> multi-threaded debugging is a nightmare. The problem is likely to be >>>>> fixed by wrapping a call to a wxPython method or function within a >>>>> wx.CallAfter() call. Grep the sources to see how often we have used >>>>> this construct already. This seems to only be triggered on your >>>>> system as I do not see it on Mac OS X 10.6, 10.7 and 10.8, Windows >>>>> 2000, Vista and 7, or Linux (Mandriva 2008.1 32-bit, Mageia 1 64-bit, >>>>> Mageia 3 64-bit, SUSE 64-bit, etc.). It may be related to wxPython >>>>> 2.9.5.0. >>>>> >>>>> This does not mean that it is not a bug in the relax GUI sources, just >>>>> that it has never been uncovered before. One trick is to find a way >>>>> of reliably and quickly reproducing the error, maybe by running a >>>>> single GUI test, and then to use the print statements to find exactly >>>>> where the error occurred. Then return statements or massive code >>>>> deletion can be used to exit a function early. If the bug is gone >>>>> after that, you know the error was in the part that was deleted. Then >>>>> this can be repeated until the bad function call can be found. The >>>>> error could also be in the GUI test itself. Here wx.Yield() calls are >>>>> often needed to prevent racing, as the test runs the GUI code much, >>>>> much faster than what a user sitting at a computer could ever do. >>>>> >>>>> Regards, >>>>> >>>>> Edward >>>>> >>>>> >>>>> >>>>> On 3 December 2013 22:23, Troels E. Linnet >>>>> <no-reply.invalid-addr...@gna.org> wrote: >>>>>> URL: >>>>>> <http://gna.org/bugs/?21324> >>>>>> >>>>>> Summary: GUI error on mac OS X Maverics 10.9 >>>>>> Project: relax >>>>>> Submitted by: tlinnet >>>>>> Submitted on: Tue 03 Dec 2013 09:23:31 PM GMT >>>>>> Category: None >>>>>> Severity: 3 - Normal >>>>>> Priority: 3 - Low >>>>>> Status: None >>>>>> Privacy: Public >>>>>> Assigned to: None >>>>>> Originator Name: >>>>>> Originator Email: >>>>>> Open/Closed: Open >>>>>> Discussion Lock: Any >>>>>> Release: Repository: trunk >>>>>> Operating System: Mac OS X (Intel) >>>>>> >>>>>> _______________________________________________________ >>>>>> >>>>>> Details: >>>>>> >>>>>> I have tried to use: >>>>>> wxPython2.9-osx-2.9.5.0-cocoa-py2.7.dmg >>>>>> and >>>>>> brew install wxmac >>>>>> >>>>>> to get the same GUI errors. >>>>>> >>>>>> Log attached. >>>>>> >>>>>> *** Terminating app due to uncaught exception 'NSRangeException', >>>>>> reason: '*** >>>>>> -[__NSArrayM objectAtIndex:]: index 18446744073709551615 beyond bounds >>>>>> for >>>>>> empty array' >>>>>> >>>>>> Could it be related to this post? >>>>>> http://stackoverflow.com/questions/17246160/textctrl-providing-an-out-of-bound-exception-in-wxpython >>>>>> >>>>>> http://stackoverflow.com/questions/13085683/xcode-terminating-app-due-to-uncaught-exception-nsrangeexception >>>>>> >>>>>> http://stackoverflow.com/questions/4289894/terminating-app-due-to-uncaught-exception-nsrangeexception-reason >>>>>> >>>>>> I will now try with: >>>>>> wxPython2.9-osx-2.9.5.0-carbon-py2.7.dmg >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> _______________________________________________________ >>>>>> >>>>>> File Attachments: >>>>>> >>>>>> >>>>>> ------------------------------------------------------- >>>>>> Date: Tue 03 Dec 2013 09:23:31 PM GMT Name: gui_error.log Size: 70kB >>>>>> By: >>>>>> tlinnet >>>>>> >>>>>> <http://gna.org/bugs/download.php?file_id=19415> >>>>>> >>>>>> _______________________________________________________ >>>>>> >>>>>> Reply to this item at: >>>>>> >>>>>> <http://gna.org/bugs/?21324> >>>>>> >>>>>> _______________________________________________ >>>>>> Message sent via/by Gna! >>>>>> http://gna.org/ >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> relax (http://www.nmr-relax.com) >>>>>> >>>>>> This is the relax-devel mailing list >>>>>> relax-devel@gna.org >>>>>> >>>>>> To unsubscribe from this list, get a password >>>>>> reminder, or change your subscription options, >>>>>> visit the list information page at >>>>>> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list relax-devel@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
