Hi, There's no need to separate them now. I've fixed both in relax. For the error you see now, if I run:
$ ./relax sample_scripts/relax_disp/cpmg_analysis.py from the base relax directory, then it will find the data in the test suite directories and perform the test analysis. Also in the Windows PowerShell: > .\relax sample_scripts\relax_disp\cpmg_analysis.py Both work for me. But Troels' response (http://thread.gmane.org/gmane.science.nmr.relax.devel/5296/focus=5326) is exactly correct. The '\t' is the Python tab character, so the missing '\' will really cause problems. Python gets around such problems by using the os.sep and os.pardir variables, as I have used in the updated scripts (http://svn.gna.org/viewcvs/*checkout*/relax/trunk/sample_scripts/relax_disp/cpmg_analysis.py?content-type=text%2Fplain). Regards, Edward On 23 April 2014 10:23, <mengjun....@mailbox.tu-berlin.de> wrote: > Hi Edward, > > Thank you very much for your suggestions. Should I separate the the > questions about test suite and cmpg_analysis.py and resubmit them ? For the > cpmy_analysis.py, I have change it to > '..\..\test_suite\shared_data\dispersion\Hansen' as your suggestion, and try > to run the script again, but there are following relaxerror, > > relax> spectrum.read_intensities(file='500_MHz\\reference.in_sparky', > dir='..\\..\test_suite\\shared_data\\dispersion\\Hansen', > spectrum_id='500_reference.in', dim=1, int_method='height', int_col=None, > spin_id_col=None, mol_name_col=None, res_num_col=None, res_name_col=None, > spin_num_col=None, spin_name_col=None, sep=None, spin_id=None, ncproc=None) > RelaxError: The sequence data does not exist. > > Thank you. > > Best regards, > > Mengjun > > > > > Quoting Edward d'Auvergne <edw...@nmr-relax.com>: > >> Hi Mengjun, >> >> I have fixed the test suite problem. This was simply a lower >> precision issue on MS Windows combined with hard-coded checks of >> optimised parameter values. It will have no effect on any analysis >> you preform. To obtain the fix, which you do not need, you will need >> to wait until I release relax 3.2.0. >> >> As for the second problem, I only just noticed it today. It is better >> to keep things separate. So the test suite problem could have been >> reported to the relax bug tracker >> (http://gna.org/bugs/?func=additem&group=relax) and the script usage >> problem to the relax-users mailing list. The fix for the script is >> that the path '../../test_suite/shared_data/dispersion/Hansen' is used >> in the script. This is incorrect as these are the Linux/Unix path >> separators. In Windows, you would need to change this to >> '..\..\test_suite\shared_data\dispersion\Hansen'. I will change the >> script so that it is compatible with all operating systems (again this >> will appear in relax 3.2.0). >> >> Cheers, >> >> Edward >> >> >> >> On 3 April 2014 21:30, anonymous <no-reply.invalid-addr...@gna.org> wrote: >>> >>> URL: >>> <http://gna.org/support/?3142> >>> >>> Summary: Error messages Relax-3.1.7 >>> Project: relax >>> Submitted by: None >>> Submitted on: Thu 03 Apr 2014 07:30:07 PM UTC >>> Category: Feature request >>> Priority: 5 - Normal >>> Severity: 3 - Normal >>> Status: None >>> Assigned to: None >>> Originator Email: mengjun....@mailbox.tu-berlin.de >>> Open/Closed: Open >>> Discussion Lock: Any >>> Operating System: Microsoft Windows >>> >>> _______________________________________________________ >>> >>> Details: >>> >>> Hi Edward, >>> >>> I am trying the new version relax-3.1.7, the full test suite failed on my >>> computer. >>> System/functional tests >>> ................................................................. [ >>> Failed ] >>> Unit tests >>> >>> .................................................................................. >>> [ OK ] >>> GUI tests >>> >>> ................................................................................... >>> [ OK ] >>> Synopsis >>> >>> ................................................................................ >>> [ Failed ] >>> >>> For relaxation dispersion, I am trying the script cpmg_analysis.py for >>> testing >>> in the folder of sample_scripts, error messgage came up, >>> >>> RelaxError: The file >>> '../../test_suite/shared_data/dispersion/Hansen\\fake_sequence.in' does >>> not >>> exist. But the fake_sequence.in is indeed in the folder of Hansen. >>> >>> Could you please give me some suggestions about the problems? Please find >>> the >>> attached log files for full test suite and cpmg_analysis.py. >>> >>> Thank you so much. >>> >>> Best regards, >>> >>> Mengjun >>> >>> >>> >>> >>> _______________________________________________________ >>> >>> File Attachments: >>> >>> >>> ------------------------------------------------------- >>> Date: Thu 03 Apr 2014 07:30:07 PM UTC Name: log_cpmg_analysis_1 Size: >>> 11kB >>> By: None >>> >>> <http://gna.org/support/download.php?file_id=20467> >>> ------------------------------------------------------- >>> Date: Thu 03 Apr 2014 07:30:07 PM UTC Name: log_full_test_suite.txt >>> Size: >>> 113kB By: None >>> >>> <http://gna.org/support/download.php?file_id=20468> >>> >>> _______________________________________________________ >>> >>> Reply to this item at: >>> >>> <http://gna.org/support/?3142> >>> >>> _______________________________________________ >>> Message sent via/by Gna! >>> http://gna.org/ >>> >>> >>> _______________________________________________ >>> relax (http://www.nmr-relax.com) >>> >>> This is the relax-devel mailing list >>> relax-devel@gna.org >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-devel >> >> >> > > > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list relax-devel@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
