Let me just revert. :-)
Best
Troels
2014-05-05 15:34 GMT+02:00 Edward d'Auvergne <edw...@nmr-relax.com>:
> Hi,
>
> On the latest relax code, I just ran:
>
> $ relax -s Relax_disp.test_hansen_cpmg_data_auto_analysis -d
>
> and the test passed. Do you have some uncommitted (or dcommitted) code?
>
> Cheers,
>
> Edward
>
>
>
>
>
> On 5 May 2014 15:30, Troels Emtekær Linnet <tlin...@nmr-relax.com> wrote:
>> Hi Edward.
>>
>> The error comes from AIC selection.
>>
>> model_selection(method='AIC', modsel_pipe='final - relax_disp',
>> bundle='relax_disp', pipes=['No Rex - relax_disp', 'LM63 -
>> relax_disp', 'CR72 - relax_disp', 'IT99 - relax_disp'])
>> AIC model selection.
>>
>>
>> The spin cluster [':4@N'].
>> debug> Lock 'pipe_lock': Acquisition by 'switch'.
>> debug> Lock 'pipe_lock': Release by 'switch'.
>> debug> Lock 'pipe_lock': Acquisition by 'switch'.
>> debug> Lock 'pipe_lock': Release by 'switch'.
>> debug> Execution lock: Release by 'relax_disp' ('auto-analysis' mode).
>> debug> Execution lock: Release by 'script UI' ('script' mode).
>> E
>> ==============================
>> ========================================
>> ERROR: test_hansen_cpmg_data_auto_analysis
>> (test_suite.system_tests.relax_disp.Relax_disp)
>> Test of the dispersion auto-analysis using Dr. Flemming Hansen's CPMG data.
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/relax_disp.py",
>> line 1256, in test_hansen_cpmg_data_auto_analysis
>> self.interpreter.run(script_file=status.install_path +
>> sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'relax_disp'+sep+'hansen_data.py')
>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>> line 275, in run
>> return run_script(intro=self.__intro_string, local=locals(),
>> script_file=script_file, show_script=self.__show_script,
>> raise_relax_error=self.__raise_relax_error)
>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>> line 569, in run_script
>> return console.interact(intro, local, script_file,
>> show_script=show_script, raise_relax_error=raise_relax_error)
>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>> line 468, in interact_script
>> exec_script(script_file, local)
>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>> line 347, in exec_script
>> runpy.run_module(module, globals)
>> File
>> "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
>> line 180, in run_module
>> fname, loader, pkg_name)
>> File
>> "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
>> line 72, in _run_code
>> exec code in run_globals
>> File
>> "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/scripts/relax_disp/hansen_data.py",
>> line 58, in <module>
>> Relax_disp(pipe_name=pipe_name, pipe_bundle=pipe_bundle,
>> results_dir=ds.tmpdir, models=MODELS, grid_inc=GRID_INC,
>> mc_sim_num=MC_NUM, numeric_only=ds.numeric_only)
>> File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py",
>> line 124, in __init__
>> self.run()
>> File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py",
>> line 502, in run
>> self.interpreter.model_selection(method=self.modsel,
>> modsel_pipe=self.name_pipe('final'), bundle=self.pipe_bundle,
>> pipes=self.model_pipes)
>> File "/Users/tlinnet/software/relax_trunk/prompt/uf_objects.py",
>> line 221, in __call__
>> self._backend(*new_args, **uf_kargs)
>> File "/Users/tlinnet/software/relax_trunk/pipe_control/model_selection.py",
>> line 214, in select
>> k, n, chi2 = model_statistics[pipe](model_info, global_stats=global_flag)
>> File
>> "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/api.py",
>> line 698, in model_statistics
>> k = param_num(spins=spins)
>> File
>> "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/parameters.py",
>> line 900, in param_num
>> raise RelaxError("The number of parameters for each spin in the
>> cluster are not the same.")
>> RelaxError: RelaxError: The number of parameters for each spin in the
>> cluster are not the same.
>>
>> 2014-05-05 14:38 GMT+02:00 Edward d'Auvergne <edw...@nmr-relax.com>:
>>> Hi Troels,
>>>
>>> But the model_statistics() method was never broken? If it wasn't
>>> working, that would be because of a problem elsewhere. Please revert
>>> this commit. I would like to see where the breakage occurs.
>>>
>>> Cheers,
>>>
>>> Edward
>>>
>>>
>>>
>>> On 5 May 2014 02:23, Troels Emtekær Linnet <tlin...@nmr-relax.com> wrote:
>>>> This commit did no go so well:
>>>> relax -s Relax_disp.test_hansen_cpmg_data_auto_analysis -d
>>>>
>>>> model_selection(method='AIC', modsel_pipe='final - relax_disp',
>>>> bundle='relax_disp', pipes=['No Rex - relax_disp', 'LM63 -
>>>> relax_disp', 'CR72 - relax_disp', 'IT99 - relax_disp'])
>>>> AIC model selection.
>>>>
>>>>
>>>> The spin cluster [':4@N'].
>>>> debug> Lock 'pipe_lock': Acquisition by 'switch'.
>>>> debug> Lock 'pipe_lock': Release by 'switch'.
>>>> debug> Lock 'pipe_lock': Acquisition by 'switch'.
>>>> debug> Lock 'pipe_lock': Release by 'switch'.
>>>> debug> Execution lock: Release by 'relax_disp' ('auto-analysis' mode).
>>>> debug> Execution lock: Release by 'script UI' ('script' mode).
>>>> E
>>>> ======================================================================
>>>> ERROR: test_hansen_cpmg_data_auto_analysis
>>>> (test_suite.system_tests.relax_disp.Relax_disp)
>>>> Test of the dispersion auto-analysis using Dr. Flemming Hansen's CPMG data.
>>>> ----------------------------------------------------------------------
>>>> Traceback (most recent call last):
>>>> File
>>>> "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/relax_disp.py",
>>>> line 1256, in test_hansen_cpmg_data_auto_analysis
>>>> self.interpreter.run(script_file=status.install_path +
>>>> sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'relax_disp'+sep+'hansen_data.py')
>>>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>>>> line 275, in run
>>>> return run_script(intro=self.__intro_string, local=locals(),
>>>> script_file=script_file, show_script=self.__show_script,
>>>> raise_relax_error=self.__raise_relax_error)
>>>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>>>> line 569, in run_script
>>>> return console.interact(intro, local, script_file,
>>>> show_script=show_script, raise_relax_error=raise_relax_error)
>>>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>>>> line 468, in interact_script
>>>> exec_script(script_file, local)
>>>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py",
>>>> line 347, in exec_script
>>>> runpy.run_module(module, globals)
>>>> File
>>>> "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
>>>> line 180, in run_module
>>>> fname, loader, pkg_name)
>>>> File
>>>> "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py",
>>>> line 72, in _run_code
>>>> exec code in run_globals
>>>> File
>>>> "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/scripts/relax_disp/hansen_data.py",
>>>> line 58, in <module>
>>>> Relax_disp(pipe_name=pipe_name, pipe_bundle=pipe_bundle,
>>>> results_dir=ds.tmpdir, models=MODELS, grid_inc=GRID_INC,
>>>> mc_sim_num=MC_NUM, numeric_only=ds.numeric_only)
>>>> File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py",
>>>> line 124, in __init__
>>>> self.run()
>>>> File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py",
>>>> line 502, in run
>>>> self.interpreter.model_selection(method=self.modsel,
>>>> modsel_pipe=self.name_pipe('final'), bundle=self.pipe_bundle,
>>>> pipes=self.model_pipes)
>>>> File "/Users/tlinnet/software/relax_trunk/prompt/uf_objects.py",
>>>> line 221, in __call__
>>>> self._backend(*new_args, **uf_kargs)
>>>> File
>>>> "/Users/tlinnet/software/relax_trunk/pipe_control/model_selection.py",
>>>> line 214, in select
>>>> k, n, chi2 = model_statistics[pipe](model_info,
>>>> global_stats=global_flag)
>>>> File
>>>> "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/api.py",
>>>> line 698, in model_statistics
>>>> k = param_num(spins=spins)
>>>> File
>>>> "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/parameters.py",
>>>> line 900, in param_num
>>>> raise RelaxError("The number of parameters for each spin in the
>>>> cluster are not the same.")
>>>> RelaxError: RelaxError: The number of parameters for each spin in the
>>>> cluster are not the same.
>>>>
>>>>
>>>> ---------- Forwarded message ----------
>>>> From: <tlin...@nmr-relax.com>
>>>> Date: 2014-05-05 1:59 GMT+02:00
>>>> Subject: r22954 - /trunk/specific_analyses/relax_disp/api.py
>>>> To: relax-comm...@gna.org
>>>>
>>>>
>>>> Author: tlinnet
>>>> Date: Mon May 5 01:59:58 2014
>>>> New Revision: 22954
>>>>
>>>> URL: http://svn.gna.org/viewcvs/relax?rev=22954&view=rev
>>>> Log:
>>>> Attempt to fix function model_statistics() in API for relax_disp.
>>>>
>>>> bug #22012(https://gna.org/bugs/?22012): dx.map not implemented for
>>>> pipe type relax_disp.
>>>>
>>>> Modified:
>>>> trunk/specific_analyses/relax_disp/api.py
>>>>
>>>> Modified: trunk/specific_analyses/relax_disp/api.py
>>>> URL:
>>>> http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/api.py?rev=22954&r1=22953&r2=22954&view=diff
>>>> ==============================================================================
>>>> --- trunk/specific_analyses/relax_disp/api.py (original)
>>>> +++ trunk/specific_analyses/relax_disp/api.py Mon May 5 01:59:58 2014
>>>> @@ -678,9 +678,21 @@
>>>> @rtype: tuple of (int, int, float)
>>>> """
>>>>
>>>> + # Bad argument combination.
>>>> + if model_info == None and spin_id == None:
>>>> + raise RelaxError("Either the model_info or spin_id
>>>> argument must be supplied.")
>>>> + elif model_info != None and spin_id != None:
>>>> + raise RelaxError("The model_info arg " + repr(model_info)
>>>> + " and spin_id arg " + repr(spin_id) + " clash. Only one should be
>>>> supplied.")
>>>> +
>>>> # Unpack the data.
>>>> spin_ids = model_info
>>>> - spins = spin_ids_to_containers(spin_ids)
>>>> + #spins = spin_ids_to_containers(spin_ids)
>>>> +
>>>> + spins_list = []
>>>> + for spin_id in self.model_loop():
>>>> + spins_list.append(spin_id[0])
>>>> +
>>>> + spins = spin_ids_to_containers(spins_list)
>>>>
>>>> # The number of parameters for the cluster.
>>>> k = param_num(spins=spins)
>>>>
>>>>
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