Hi Edward, Thanks for the email. I wanted to use the 1.3 branch to utilize the script 'diff_tensor_pdb.py' with analysis output files from the 1.2 branch -- that script (and apparently all of the other scripts in the sample_scripts directory) still uses 'run' instead of 'pipe', etc.
Thanks, Doug On Jan 24, 2008, at 10:18 AM, Edward d'Auvergne wrote: > Hi, > > The problem is simply differences between the stable 1.2 versions and > the unstable 1.3 line. In the development of relax 1.3, many of the > user functions have been renamed. There has also been a significant > redesign of relax. For full details, have a look at the following > links and the threads that they start: > > * The parent message 'Redesign of the relax data model: A HOWTO for > breaking relax.' located at > https://mail.gna.org/public/relax-devel/2006-10/msg00053.html > (Message-id: > <[EMAIL PROTECTED]>). > > * Section 1 'Redesign of the relax data model: 1. Why change?' > located at https://mail.gna.org/public/relax-devel/2006-10/ > msg00054.html > (Message-id: > <[EMAIL PROTECTED]>). > > * Section 2 'Subject: Redesign of the relax data model: 2. A new run > concept' located at > https://mail.gna.org/public/relax-devel/2006-10/msg00056.html > (Message-id: > <[EMAIL PROTECTED]>). > > * Section 3 'Redesign of the relax data model: 3. Molecules, > residues, and spins' located at > https://mail.gna.org/public/relax-devel/2006-10/msg00057.html > (Message-id: > <[EMAIL PROTECTED]>). > > * Section 4 'Redesign of the relax data model: 4. Conclusion' > located at https://mail.gna.org/public/relax-devel/2006-10/ > msg00058.html > (Message-id: > <[EMAIL PROTECTED]>). > > > Note also that the 1.3 line code is not fully functional yet as this > redesign has been slow and is still in progress. But if you do want > to play with the current code, note that the name 'run' has been > replaced by the name 'pipe' and that the concept of a data pipe has > been introduced so that the pipe name is not passed into each user > function. That user functions apply automatically to the 'current' > data pipe in which you are currently sitting. And that you can switch > between data pipes, merge them, branch them, etc. > > Regards, > > Edward > > > > On Jan 24, 2008 3:14 PM, Douglas Kojetin > <[EMAIL PROTECTED]> wrote: >> Hi All, >> >> When trying to use relax 1.3 (current svn version), I see the >> following error when trying to use run.create(): >> >> % /usr/local/relax/1.3/relax >> >> ImportError: relaxation curve fitting is unavailible, try compiling >> the C modules. >> >> >> >> relax repository checkout >> >> Protein dynamics by NMR relaxation data >> analysis >> >> Copyright (C) 2001-2006 Edward >> d'Auvergne >> Copyright (C) 2006-2008 the relax >> development team >> >> This is free software which you are welcome to modify and >> redistribute under the conditions of the >> GNU General Public License (GPL). This program, including all >> modules, is licensed under the GPL >> and comes with absolutely no warranty. For details type 'GPL'. >> Assistance in using this program >> can be accessed by typing 'help'. >> >> relax> run.create('test','mf') >> Traceback (most recent call last): >> File "<console>", line 1, in ? >> NameError: name 'run' is not defined >> relax> >> >> >> >> Any ideas about this problem? >> >> Thanks, >> Doug >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
