Is it possible to output all of the text from the test-suite to a text file to
make it easier to search? I've tried the standard > test.out type command and
only the final portion of the test is entered to the file.
Also, this seems kind of bad:
###################################
# Summary of the relax test suite #
###################################
System/functional tests
............................................................. [ Failed ]
Unit tests
.......................................................................... [
OK
]
Synopsis
............................................................................ [
Failed ]
Quoting Edward d'Auvergne <[EMAIL PROTECTED]>:
> Hi,
>
> Thanks for the description of how to get this running on the Mac. If
> anyone else knows how to get the python development files,
> specifically Python.h, properly installed and working on Mac OS X,
> that information would be much appreciated. It is quite easy to test
> if relax will work with the compiled C modules, well only for the
> 1.3.x relax versions. Just type:
>
> $ relax --test-suite
>
> Note that because the 1.3 line is a development line, not all tests
> will pass. But if there is a test failure mentioning the C modules,
> or if the test named "Test the relaxation curve fitting C modules"
> fails - then you know that you have a problem.
>
> Cheers,
>
> Edward
>
>
> On Thu, Oct 16, 2008 at 1:44 AM, Tyler Reddy <[EMAIL PROTECTED]> wrote:
>> For the mac installation I'd suggest just doing it from the source file for
>> relax and installing the various dependencies outlined for general use of
>> relax
>> in the manual.
>>
>> The only part that's challenging is the compilation for the curve fitting
>> feature. You can get a C-compiler from Apple as part of their developer
>> tools
>> package (just make sure you get the package that matches your version of Mac
>> OS). You have to register on the apple developer site, but it's
>> short/free/simple. Then you have the standard 'gcc' compiler.
>>
>> The tricky part is getting the correct Python.h header file for compilation.
>> I've compiled 4 or 5 versions of relax (on OS 10.4) using the Python.h
>> header
>> file that came with Sparky, but as Edward suggested in his responses to the
>> 2nd
>> thread cited in his message, it would be better to have the 'correct' header
>> file from an actual python development package. Believe it or not, when I
>> put
>> one of those 'development' header files in the path, the compilation doesn't
>> work, only with the Sparky header... So I've been kind of blindly accepting
>> that for now.
>>
>> Still, relax seems to run just fine on the mac.
>>
>> Quoting Edward d'Auvergne <[EMAIL PROTECTED]>:
>>
>>> Hi,
>>>
>>> Welcome to the relax-users mailing list. The problem you have
>>> encountered is because relax only runs on Python versions 2.4 and
>>> above. Python 2.3 may work, although I just ran relax with version
>>> and the test suite failed - 23 failures out of 63 system tests, and
>>> the unit test won't even run. So I would strongly recommend using 2.4
>>> and above. As for using relax on Mac OS X, that should be no problem
>>> at all. If you would like to use relaxation curve fitting to
>>> determine the R1 and R2 relaxation rates, then you'll need to install
>>> a number of development packages and compile the sources. This is
>>> described here:
>>> https://mail.gna.org/public/relax-users/2008-08/msg00003.html. It
>>> would be very useful to read the whole thread starting at
>>> https://mail.gna.org/public/relax-users/2008-10/msg00000.html as well.
>>> Tyler, or anyone else, did you have any success with relax on your
>>> Mac?
>>>
>>> Regards,
>>>
>>> Edward
>>>
>>>
>>> On Wed, Oct 15, 2008 at 3:50 PM, Guang-Yao Li <[EMAIL PROTECTED]> wrote:
>>>>
>>>> Hi Ed,
>>>>
>>>> My linux computer is running Fedora core 6. The available python is
>>>> python2.2 together with ccpnmr.
>>>>
>>>> After I uncompressed the precompiled relax-1.3.2.GUN-Linux.i686.tar.bz2,
>>>> I
>>>> simply tried relax and got the following message.
>>>>
>>>> Is it a python issue or anything else?
>>>>
>>>>
>>>>
>>>> Traceback (most recent call last):
>>>>
>>>> File "relax", line 38, in ?
>>>>
>>>> import dep_check
>>>>
>>>> File "/users/ikuradata/gyli/linux/progs/relax-1.3.2/dep_check.py", line
>>>> 30, in ?
>>>>
>>>> import platform
>>>>
>>>> ImportError: No module named platform
>>>>
>>>>
>>>>
>>>> By the way, are there any successful stories about installing relax on
>>>> Mac?
>>>> I am more interested in run it on my macbook than try it under the
>>>> control
>>>> of my IT people.
>>>>
>>>>
>>>>
>>>> Thank you
>>>>
>>>>
>>>>
>>>> ---------------------
>>>>
>>>> Guang-Yao Li, Ph.D.
>>>>
>>>> Toronto Medical Discovery Tower
>>>>
>>>> 4th Floor, Room 4-902
>>>>
>>>> 101 College Street
>>>>
>>>> Toronto, Canada, M5G 1L7
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> relax (http://nmr-relax.com)
>>>>
>>>> This is the relax-users mailing list
>>>> [email protected]
>>>>
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>>>> reminder, or change your subscription options,
>>>> visit the list information page at
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>>>>
>>>>
>>>
>>
>>
>>
>>
>
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