Dear Tiago, This is a hard one to catch. I have just added a function to this script to check the validity of the user variables (http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup). This should give better error messages specifically identifying the problem. For this second issue you are having, it is a little hard to see what the problem is. Would you be able to supply a little more information. For example the version of relax you are using, the full error message, how you have executed the full_analysis.py script and at what stage you are up to, etc. With more information, I should be able to track down the issue.
Cheers, Edward 2009/10/22 Tiago Pais <[email protected]>: > Hi Sebastien, > The thing is it was not exactly an error of the script. In the line 639 you > have to adjust the script so that it agrees with the format of the function > that you have used in line 174 "Relax_Data=[...". If in line 174 you > describe the data sets with only three parameters (e.g.[Rilabel, freq, > file]) then, in line 639 you have to adapt the function so that the program > reads only three sets of parameters (e.g. relax_data.read(data[0], data[1], > data[2], data[3]) while in the original file was set to read 13. > This is beginners' stuff, but that's exactly what I am with respect to RELAX > and PYTHON, so it may be usefull for other beginners. > > However, I still have not managed to run the script to the end. At the > moment I am stuck with yet another error message: AttributeError: > 'PipeContainer' object has no attribute 'diff_tensor' > > If anyone can help me and avoid that I loose time with this probably easy to > solve error, please do. > Thanks > Tiago P > > -----Original Message----- > From: Sébastien Morin [mailto:[email protected]] > Sent: quarta-feira, 21 de Outubro de 2009 19:46 > To: Tiago Pais > Cc: 'Edward d'Auvergne'; 'Boaz Shapira'; [email protected] > Subject: Re: Error when running full_analysis.py script > > Dear Tiago, > > Just for the logs, could you tell us what was the problem ? > > Regards, > > > Sébastien > > > Tiago Pais wrote: >> Ok, managed to solve this already. >> Cheers >> Tiago >> >> -----Original Message----- >> From: [email protected] [mailto:[email protected]] On >> Behalf Of Tiago Pais >> Sent: quarta-feira, 21 de Outubro de 2009 15:53 >> To: 'Edward d'Auvergne'; 'Boaz Shapira' >> Cc: [email protected] >> Subject: Error when running full_analysis.py script >> >> Dear all, >> I am using 15N relaxation data previously analyzed to test some of the >> scripts available in Relax to make sure that I am using it correctly. >> However, I get the following error message when running the sample script >> full_analysis.py: "List Index out of Range" >> Below is "print screen" where the error shows up at the bottom: >> >> "None 149 Q None None >> >> relax> spin.name(spin_id=None, name='N', force=False) >> Traceback (most recent call last): >> File "/usr/local/bin/relax", line 418, in <module> >> Relax() >> File "/usr/local/bin/relax", line 127, in __init__ >> self.interpreter.run(self.script_file) >> File "/usr/local/relax/prompt/interpreter.py", line 276, in run >> return run_script(intro=self.__intro_string, local=self.local, >> script_file=script_file, quit=self.__quit_flag, >> show_script=self.__show_script, >> raise_relax_error=self.__raise_relax_error) >> File "/usr/local/relax/prompt/interpreter.py", line 537, in run_script >> return console.interact(intro, local, script_file, quit, >> show_script=show_script, raise_relax_error=raise_relax_error) >> File "/usr/local/relax/prompt/interpreter.py", line 433, in >> interact_script >> execfile(script_file, local) >> File "full_analysis.py", line 671, in <module> >> Main(self.relax) >> File "full_analysis.py", line 220, in __init__ >> self.multi_model(local_tm=True) >> File "full_analysis.py", line 639, in multi_model >> relax_data.read(data[0], data[1], data[2], data[3], data[4], data[5], >> data[6], data[7], data[8], data[9], data[10], data[11], >> data[12]) >> IndexError: list index out of range" >> >> I can't understand if the error relates to the last command listed, > actually >> I can't understand the command given in this line (639) - what is it > suppose >> to do? >> >> Best regards >> TiagoP >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> >> >> _______________________________________________ >> relax (http://nmr-relax.com) >> >> This is the relax-users mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users >> > > > -- > Sébastien Morin > PhD Student > S. Gagné NMR Laboratory > Université Laval & PROTEO > Québec, Canada > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
